| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is hmsS [C]
Identifier: 170024467
GI number: 170024467
Start: 2482471
End: 2482938
Strand: Reverse
Name: hmsS [C]
Synonym: YPK_2238
Alternate gene names: 170024467
Gene position: 2482938-2482471 (Counterclockwise)
Preceding gene: 170024468
Following gene: 170024466
Centisome position: 52.95
GC content: 49.79
Gene sequence:
>468_bases ATGAGTACGCCCCTGATTTTTACGGAACAGCGTCTGCTACCGCGTTGGATTGACATTATCATTACGGCGTTAGCCTGGTT TGGTTTTGTCTTCCTGCTGGTGCGGGGCTTTTTGGAAATGATTAGCCGAGCGCCACATATGGGGCCGATACCGTTGAGGA TTTATATTCTCAGCGGTTTGACGACGATTGCATTATATCTGGCGATAGCGGCATTTAATGCCGTCGTACTGATTATCTGG GCCAAATACAATCAGGTCCGTTTCCAGGTTGAACGCCGTGGCCACCGACCCGATCTGGATGATGATGAATTGGCAAGCAG CATGGCGCTTTCACCTGAGTTGATCGCCCAACTCAAAAGTGGCTCGTGTCTCACGTTATACAATGATGAGCACGGGCATT TATTGGATGTGAAAGAGGGGCTCCAACTGCCAGAAGTTGCTCCAGTGATCCATTTACGCCAGGGATGA
Upstream 100 bases:
>100_bases TGTTTACCACGGTGGTGTCGTTCCCGAAAGTGATGCTTATCACCAAGCGTAAGCGTGCGCGTTGGGTAAGCCCTGATCGC GGCATTGGGAGGGTGAAATC
Downstream 100 bases:
>100_bases AGCGCGCCACTCTATTATGAATCCGTAAAAGTTCTGGATACTTGAGTGAGTATTATCAGGTATTCAGGACGCATTTTTGT TGAATGCTATACCCAGCCTG
Product: hemin storage system protein
Products: NA
Alternate protein names: Haemin Storage System; Hemin Storage System
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MSTPLIFTEQRLLPRWIDIIITALAWFGFVFLLVRGFLEMISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNAVVLIIW AKYNQVRFQVERRGHRPDLDDDELASSMALSPELIAQLKSGSCLTLYNDEHGHLLDVKEGLQLPEVAPVIHLRQG
Sequences:
>Translated_155_residues MSTPLIFTEQRLLPRWIDIIITALAWFGFVFLLVRGFLEMISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNAVVLIIW AKYNQVRFQVERRGHRPDLDDDELASSMALSPELIAQLKSGSCLTLYNDEHGHLLDVKEGLQLPEVAPVIHLRQG >Mature_154_residues STPLIFTEQRLLPRWIDIIITALAWFGFVFLLVRGFLEMISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNAVVLIIWA KYNQVRFQVERRGHRPDLDDDELASSMALSPELIAQLKSGSCLTLYNDEHGHLLDVKEGLQLPEVAPVIHLRQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17503; Mature: 17372
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPLIFTEQRLLPRWIDIIITALAWFGFVFLLVRGFLEMISRAPHMGPIPLRIYILSGL CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH TTIALYLAIAAFNAVVLIIWAKYNQVRFQVERRGHRPDLDDDELASSMALSPELIAQLKS HHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCC GSCLTLYNDEHGHLLDVKEGLQLPEVAPVIHLRQG CCEEEEEECCCCCEEEHHHCCCCCCCCCEEEECCC >Mature Secondary Structure STPLIFTEQRLLPRWIDIIITALAWFGFVFLLVRGFLEMISRAPHMGPIPLRIYILSGL CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH TTIALYLAIAAFNAVVLIIWAKYNQVRFQVERRGHRPDLDDDELASSMALSPELIAQLKS HHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCC GSCLTLYNDEHGHLLDVKEGLQLPEVAPVIHLRQG CCEEEEEECCCCCEEEHHHCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA