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The map label for this gene is yhdW [H]

Identifier: 170024399

GI number: 170024399

Start: 2405438

End: 2406268

Strand: Reverse

Name: yhdW [H]

Synonym: YPK_2167

Alternate gene names: 170024399

Gene position: 2406268-2405438 (Counterclockwise)

Preceding gene: 170024406

Following gene: 170024398

Centisome position: 51.31

GC content: 52.71

Gene sequence:

>831_bases
ATGGCGTTTAATTTTCACCAAGCGGAAAAGGGGATCGTGCTAGCCAATAGTCACCGGGGTTATTCCAGTTGCCGACCGGA
GAACACCTTCCCTGCTTTTGAAGCAGCCCGGCTGGCGGGGACACACTGTATTGAAATCGATATTCATCTCACTGCGGATA
ACCAGTTGGTGGTGACACATGACCACCGCGTCGATCGCGTCTCCACCGGGCAGGGTTTCGTTGAGCAATTGACCTATCCG
CAACTGCTGGAATTCGATTTTGGCATGAAATATCATCCGGATTTCGCCGGGACGCGCATACCACTGCTGGCCGATGTGCT
GCGATGGGCGGTGAAAAACGGGATGGGGCTGATTGTTGAGGCCAAGCAGCGCCGCCGCCACGATGAGTTTGTTGCAGCAA
TGGTCGCGATGCTGCGTGAGCTGCCGGAAGCGATTTCCCATATCCAGATGCTGGGATTTAACCATGCTCTGATCAACCGG
GTGAAGGCACACATTCCAGAGTTGGCGCTACAGGTAGTCACGTTGGAACGCTACAATAACCAACTGGCGGTGGTACAACA
GTCGAACGCAAGCTGTGTGTGCTTTGAGTATGAATTTGCCCATATAGACGATCTTCGCGCTTACAAAAAGGCGGGTCTAG
GGGTGCGGATGTACTTGCATGAAGTGAAAAATGGTCTGGATCCGCTGACGCAATACCAGTACAAATTCGGGTATGATAGT
CGCCCGGAGATCCTAAGCTGGCTGCGTGAAGGGCTGATCGACATGCTTAGCCACGATGATATTCCATATCTTCAGGCGCT
AATTGAAGAAGCGGGTCTGCGCTGGGATTAA

Upstream 100 bases:

>100_bases
TAAAAAACAATCAATTGACTTTTTTGTGATAAAATAGCTTTATCATTTAAATTTAAATAGTAAATTTAATAATCATGATA
TCAATAAGGGGCATTACATA

Downstream 100 bases:

>100_bases
TATTAAGGACACCATGAATATCCGACCTGAACGGCTTGAACTGCGCGGATCACAGCGCTTACTGCTGGAACTGATCCGCC
GTCATGCGCCCGTCACACGT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MAFNFHQAEKGIVLANSHRGYSSCRPENTFPAFEAARLAGTHCIEIDIHLTADNQLVVTHDHRVDRVSTGQGFVEQLTYP
QLLEFDFGMKYHPDFAGTRIPLLADVLRWAVKNGMGLIVEAKQRRRHDEFVAAMVAMLRELPEAISHIQMLGFNHALINR
VKAHIPELALQVVTLERYNNQLAVVQQSNASCVCFEYEFAHIDDLRAYKKAGLGVRMYLHEVKNGLDPLTQYQYKFGYDS
RPEILSWLREGLIDMLSHDDIPYLQALIEEAGLRWD

Sequences:

>Translated_276_residues
MAFNFHQAEKGIVLANSHRGYSSCRPENTFPAFEAARLAGTHCIEIDIHLTADNQLVVTHDHRVDRVSTGQGFVEQLTYP
QLLEFDFGMKYHPDFAGTRIPLLADVLRWAVKNGMGLIVEAKQRRRHDEFVAAMVAMLRELPEAISHIQMLGFNHALINR
VKAHIPELALQVVTLERYNNQLAVVQQSNASCVCFEYEFAHIDDLRAYKKAGLGVRMYLHEVKNGLDPLTQYQYKFGYDS
RPEILSWLREGLIDMLSHDDIPYLQALIEEAGLRWD
>Mature_275_residues
AFNFHQAEKGIVLANSHRGYSSCRPENTFPAFEAARLAGTHCIEIDIHLTADNQLVVTHDHRVDRVSTGQGFVEQLTYPQ
LLEFDFGMKYHPDFAGTRIPLLADVLRWAVKNGMGLIVEAKQRRRHDEFVAAMVAMLRELPEAISHIQMLGFNHALINRV
KAHIPELALQVVTLERYNNQLAVVQQSNASCVCFEYEFAHIDDLRAYKKAGLGVRMYLHEVKNGLDPLTQYQYKFGYDSR
PEILSWLREGLIDMLSHDDIPYLQALIEEAGLRWD

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=203, Percent_Identity=25.1231527093596, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 31578; Mature: 31446

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFNFHQAEKGIVLANSHRGYSSCRPENTFPAFEAARLAGTHCIEIDIHLTADNQLVVTH
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCEEEEEE
DHRVDRVSTGQGFVEQLTYPQLLEFDFGMKYHPDFAGTRIPLLADVLRWAVKNGMGLIVE
CCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
AKQRRRHDEFVAAMVAMLRELPEAISHIQMLGFNHALINRVKAHIPELALQVVTLERYNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QLAVVQQSNASCVCFEYEFAHIDDLRAYKKAGLGVRMYLHEVKNGLDPLTQYQYKFGYDS
EEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCC
RPEILSWLREGLIDMLSHDDIPYLQALIEEAGLRWD
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AFNFHQAEKGIVLANSHRGYSSCRPENTFPAFEAARLAGTHCIEIDIHLTADNQLVVTH
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCEEEEEE
DHRVDRVSTGQGFVEQLTYPQLLEFDFGMKYHPDFAGTRIPLLADVLRWAVKNGMGLIVE
CCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
AKQRRRHDEFVAAMVAMLRELPEAISHIQMLGFNHALINRVKAHIPELALQVVTLERYNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QLAVVQQSNASCVCFEYEFAHIDDLRAYKKAGLGVRMYLHEVKNGLDPLTQYQYKFGYDS
EEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCC
RPEILSWLREGLIDMLSHDDIPYLQALIEEAGLRWD
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]