Click here to switch to the map view.

The map label for this gene is dmsD [H]

Identifier: 170023694

GI number: 170023694

Start: 1603661

End: 1604257

Strand: Reverse

Name: dmsD [H]

Synonym: YPK_1453

Alternate gene names: 170023694

Gene position: 1604257-1603661 (Counterclockwise)

Preceding gene: 170023695

Following gene: 170023693

Centisome position: 34.21

GC content: 48.58

Gene sequence:

>597_bases
ATGCTACTCAATACCACCTTGCCGCGAATTTTAGGCGCGTGTTTTTATTATCCACCGCAATCAGATACGGTACAGCGCCT
CTTTCCGTTATTGCCACACATTGCTGAGCTTTTCCCTTGGCCCGATCACGCGAGCATGGTGCAATATTGCCAGCAAATAC
CGGATATCTCCCCTGAACGACTGGAGTACGATTTTTCGATTCTGTTTGAAGGCCAAGGTGCGATGCCAGCCCCGCCTTGG
GGTTCCGTTTATCTGGATAAAGAAAATATTTTGATGGGTGCCAGCACCTTGCAATACCGTGAATTTTTAGCCGAACAGGG
ATGGGTTAGCCAAAGCCCTCTGCGTGAACCGGAAGATCAGTTTGGCTTAATGTTATTAGCATGGGTAAATTTGATCGAAC
AACATAATAAGGACGCAGCTAGCGTGCTGCTAACCGCGCATTTACTGCCGTGGGCGTACCGTTATCTTGAACAGGTCAAC
GCAGCCCAAGTCGAATACCCGGTTTATCCCTTACTGGCCAAAATAGCGGCTTGCTACCTGAAAACCTTGCAAACAGAGTT
GGTATTATCTCCTCTGCCCCGTGAGCTATATCGGTGA

Upstream 100 bases:

>100_bases
CCCCAGGAGCTTACACCGGTAAGTGACTGGGGTGAGTGAAGGCGGCCAACGCATCTGCAGCTTGAAATATGACGGGTATT
ACATAAGAGCGATAACCCCG

Downstream 100 bases:

>100_bases
CAAAAAATAAATCAGTGGCCAGAGACGAACGTTACTATAAAGCTTATCTGGAAAGCCGGACGATCAGCCGCCGGGGGCTA
TTTCGTGGCTTGCTGAAAGG

Product: cytoplasmic chaperone TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDISPERLEYDFSILFEGQGAMPAPPW
GSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLEQVN
AAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR

Sequences:

>Translated_198_residues
MLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDISPERLEYDFSILFEGQGAMPAPPW
GSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLEQVN
AAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR
>Mature_198_residues
MLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDISPERLEYDFSILFEGQGAMPAPPW
GSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLEQVN
AAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=191, Percent_Identity=35.0785340314136, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 22741; Mature: 22741

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDISPER
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
LEYDFSILFEGQGAMPAPPWGSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQ
HCCCEEEEEECCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCHHH
FGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLEQVNAAQVEYPVYPLLAKIAACYL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KTLQTELVLSPLPRELYR
HHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDISPER
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
LEYDFSILFEGQGAMPAPPWGSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQ
HCCCEEEEEECCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCHHH
FGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLEQVNAAQVEYPVYPLLAKIAACYL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KTLQTELVLSPLPRELYR
HHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]