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The map label for this gene is ydeM [H]

Identifier: 170023621

GI number: 170023621

Start: 1519180

End: 1520355

Strand: Direct

Name: ydeM [H]

Synonym: YPK_1379

Alternate gene names: 170023621

Gene position: 1519180-1520355 (Clockwise)

Preceding gene: 170023620

Following gene: 170023625

Centisome position: 32.4

GC content: 39.46

Gene sequence:

>1176_bases
ATGCATATCACGGCTAAACCAACCAGCTACCAGTGTAATTTAAAGTGTGATTACTGCTTTTATCTCAGTAAAGAAAACAT
TTTTCAGCACAAAGGTTGGATGACTGAAGAAACCCTTGAAACATTTATCGAGCGATATATCAGTACATCGGGGCATGATG
TGTATTTCACTTGGCAAGGGGGTGAGCCTACCATGGCTGGGCTGGATTTCTTTGAGAAAGCGATACAGTATCAGAACCGC
TATAAAGGGACTAAAAAAATACACAACGCTTTACAAACTAACGGTATTTTATTAGATGATGCATGGTGTCTCTTTCTAAG
AGAAAATCATTTTTTAGTCGGTGTGTCTATTGATGGCCCTAAAGAGTTACACGATCGCTACCGTGTGACTCGCTCAGGCA
AAGGATCGTTTGATAAAGTGATGGCAGGTATTGAGCAACTCAAAAAACATCAGGTAGAGTTCAATACATTAACCGTGATA
AATCGTATCAACGTAAAATACCCCCTTGAAGTTTATCGAACGTTAAAATCTATCGGTGCTAAACATATCCAATTTATTGA
ACTGTTGGAAACAACCGAGCCTAATATTGATTTTTCAAATCAAAAAAGCACGTTTGAACTTATTGAGTTCACTGTCCCTG
CGGTTGATTATGGCCATTTCATGGCGGAGGTCTTCAAAGAATGGGTTCGCCATGATGTAGGAACTCTCTTTATTCGCCAG
TTTGAGTCTTTTGTCAGCCGATTTATTGGCAATGGGCACACGAGCTGTGTTTTCCAAAAATCGTGCAAAAATAATTTTGT
GATGGAGTCCAATGGTGACATTTATGAATGTGATCACTTTGTCTACCCTGAGTATAAAATAGGCAATATTTACCACGATA
AATTGGATTCGTTGGCGAGCGATAAATTATCCGCGCAAAAAGAGGTGCTATCTGAGTCATGCCGTAAGTGTATGTATAAA
GCCATTTGCTATGGCGGTTGCCCAAAACATAGGATTGATCAGGACAGCGATGGGATGAAATCCTATTTTTGCGCAGGGTA
TAAAATACTCTTCTCGGTTATGGTGCCTTATATGAATGCGCTGGCTGAATTAGAAAAAAATGGTATTCCATTGGATAAGA
TCATGGGTATCGTCGATGACATTGAAGGTGGAATAAAATCACAACAGCAGCATTAA

Upstream 100 bases:

>100_bases
AGGATAAATTTAATAAAATTAAGCAATCGCTTGGTATGAATTAAGCCCCAAAGGCGGCAAGTATTTTTCTTGCCGTCTGT
CTATCTCCATGAGGAAAACT

Downstream 100 bases:

>100_bases
TTATGGTCATTGACCTACAAGATAGAGGCTCACTAATATAAAAGATGGCGTATTAGTGAGCGAACACGGGGTCCAAGCTA
ATTGGTATTGTTACAAACAG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISTSGHDVYFTWQGGEPTMAGLDFFEKAIQYQNR
YKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGPKELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVI
NRINVKYPLEVYRTLKSIGAKHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLASDKLSAQKEVLSESCRKCMYK
AICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNALAELEKNGIPLDKIMGIVDDIEGGIKSQQQH

Sequences:

>Translated_391_residues
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISTSGHDVYFTWQGGEPTMAGLDFFEKAIQYQNR
YKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGPKELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVI
NRINVKYPLEVYRTLKSIGAKHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLASDKLSAQKEVLSESCRKCMYK
AICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNALAELEKNGIPLDKIMGIVDDIEGGIKSQQQH
>Mature_391_residues
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISTSGHDVYFTWQGGEPTMAGLDFFEKAIQYQNR
YKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGPKELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVI
NRINVKYPLEVYRTLKSIGAKHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLASDKLSAQKEVLSESCRKCMYK
AICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNALAELEKNGIPLDKIMGIVDDIEGGIKSQQQH

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=383, Percent_Identity=65.5352480417755, Blast_Score=552, Evalue=1e-158,
Organism=Escherichia coli, GI48994973, Length=392, Percent_Identity=40.0510204081633, Blast_Score=328, Evalue=4e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 45163; Mature: 45163

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISTSGHDVYFTWQG
CEECCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
GEPTMAGLDFFEKAIQYQNRYKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGP
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCEEEEEECCEEEEEEECCCH
KELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVINRINVKYPLEVYRTLKSIGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHHHCH
KHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLAS
HHHHHHHHHCCCCCHHEEHHHHCCCEEEECCCCEEECCCEECCCCEECCCHHHHHHHHHH
DKLSAQKEVLSESCRKCMYKAICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAELEKNGIPLDKIMGIVDDIEGGIKSQQQH
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISTSGHDVYFTWQG
CEECCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
GEPTMAGLDFFEKAIQYQNRYKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGP
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCEEEEEECCEEEEEEECCCH
KELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVINRINVKYPLEVYRTLKSIGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHHHCH
KHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLAS
HHHHHHHHHCCCCCHHEEHHHHCCCEEEECCCCEEECCCEECCCCEECCCHHHHHHHHHH
DKLSAQKEVLSESCRKCMYKAICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAELEKNGIPLDKIMGIVDDIEGGIKSQQQH
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]