| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is xseA [H]
Identifier: 170023547
GI number: 170023547
Start: 1430339
End: 1431718
Strand: Reverse
Name: xseA [H]
Synonym: YPK_1301
Alternate gene names: 170023547
Gene position: 1431718-1430339 (Counterclockwise)
Preceding gene: 170023550
Following gene: 170023533
Centisome position: 30.53
GC content: 52.25
Gene sequence:
>1380_bases ATGTCGCAATCTTCCGCCTCCTCAATTTTTACTGTCAGCCGCCTGAATCAGACGGTACGAGAACTATTGGAAAGGGAAAT GGGCCAGATTTGGCTCACTGCCGAGATTTCTAATTTCTCTCAGCCCGCTTCTGGGCACTGGTATTTCACGCTGAAAGATG ATCGGGCGCAAGTGCGCTGTGCCATGTTTCGTAACAGCAACCGCCGCACCACTTTCCGTCCGCAGAATGGCCAACAAGTT TTGGTTAGGGCATCAATTACCCTGTATGAACCCCGTGGTGATTATCAGTTAATTGCGGAAAGTATGCAGCCTGCCGGTGA TGGGTTGCTGCAACAACAATTTGAACAGCTTAAGCAACAATTAGCGGCCGAAGGGCTGTTTGATCAAAGCCACAAACAGC CACTCCCTAGCCCCGCCAAACAAGTGGGCGTAATAACGTCTGCCAGTGGGGCTGCGCTGCATGATGTGCTGCATGTGTTA CAGCGCCGTGATCCATCGCTTCCAGTAATTATTTATCCCACATCAGTACAGGGCGTTGATGCGCCATTGCAGATAGTCCG TGCGATCCAGTTGGCGAACTTACGTGCTGAATGCGATGTATTGATTGTTGGCCGCGGTGGCGGATCGCTAGAAGATTTGT GGAGTTTCAACGACGAACGGGTTGCCCGCGCTATCTTTAACAGCCATATCCCTATCGTCAGCGCTGTCGGCCATGAAACC GATGTCACTATTGCCGATTTTGTTGCTGATTTACGCGCCCCAACCCCTTCGGCTGCCGCCGAGCTAGTCAGTCGCAATCA GATTGAGCTCGTTCGTCAGATTCAAGGGCAACAGCAACGAATGGAAATGGCGATGGATTACTATCTGGCGCAACGCACCC AGCAATTCACCCGCCTTGAACACCGTTTGCAGCAACAGCATCCGCATTTACGTTTAGCCCGTCAGCAAACATTGTTGCTG AAATTACAACGTAGGCTGGAAGAGAGTGCACAAACACAGATCCGCTTATTAAGTAAACGTACCGAGCGGCTGCAACAGCG TTTGCAGCAAGTGCAGCCTCAGGGGCAAATTCACCGGTATAACCAGCGGGTACAGCAGCAAGAATACCGTTTACGTCAAG CTGTAGAGCGCCAGCTCAATGGCTATCGCCAACGCTTTGGTATCGCCTGCTCCCAGCTAGAGGCCGTGAGCCCACTGGCA ACACTGGCCCGTGGCTACAGCGTGACACAGACGCCAGCAGGGGCGTTATTGAAGACCACCAAGCAAGTACAGGCCGGTGA TAAACTGACCACCCGGTTGCAAGACGGTTGGGTGGAAAGTGAGATTACCCAAGTCACCGTAGCGAAGAAAAGCCGTCAGA AAAAAGTAGTGACGCAGTGA
Upstream 100 bases:
>100_bases GATTGCCTCCAGCACTTTCTCATAATATTTCTTGCCAACCAGTTTGAGGCAGGTAATATCGGTTAATTAAGTCCTTGTTT TAAAATTTGATCCAGGTCAC
Downstream 100 bases:
>100_bases TTATAGCGGCAAGGATGGGGCTGCCAGTAAAACCATCAGCCTCTAACACTCTTTCGTTGATCATTTCCCCACCTGATAAG CCGTCAGCTTACCGGTAAGT
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MSQSSASSIFTVSRLNQTVRELLEREMGQIWLTAEISNFSQPASGHWYFTLKDDRAQVRCAMFRNSNRRTTFRPQNGQQV LVRASITLYEPRGDYQLIAESMQPAGDGLLQQQFEQLKQQLAAEGLFDQSHKQPLPSPAKQVGVITSASGAALHDVLHVL QRRDPSLPVIIYPTSVQGVDAPLQIVRAIQLANLRAECDVLIVGRGGGSLEDLWSFNDERVARAIFNSHIPIVSAVGHET DVTIADFVADLRAPTPSAAAELVSRNQIELVRQIQGQQQRMEMAMDYYLAQRTQQFTRLEHRLQQQHPHLRLARQQTLLL KLQRRLEESAQTQIRLLSKRTERLQQRLQQVQPQGQIHRYNQRVQQQEYRLRQAVERQLNGYRQRFGIACSQLEAVSPLA TLARGYSVTQTPAGALLKTTKQVQAGDKLTTRLQDGWVESEITQVTVAKKSRQKKVVTQ
Sequences:
>Translated_459_residues MSQSSASSIFTVSRLNQTVRELLEREMGQIWLTAEISNFSQPASGHWYFTLKDDRAQVRCAMFRNSNRRTTFRPQNGQQV LVRASITLYEPRGDYQLIAESMQPAGDGLLQQQFEQLKQQLAAEGLFDQSHKQPLPSPAKQVGVITSASGAALHDVLHVL QRRDPSLPVIIYPTSVQGVDAPLQIVRAIQLANLRAECDVLIVGRGGGSLEDLWSFNDERVARAIFNSHIPIVSAVGHET DVTIADFVADLRAPTPSAAAELVSRNQIELVRQIQGQQQRMEMAMDYYLAQRTQQFTRLEHRLQQQHPHLRLARQQTLLL KLQRRLEESAQTQIRLLSKRTERLQQRLQQVQPQGQIHRYNQRVQQQEYRLRQAVERQLNGYRQRFGIACSQLEAVSPLA TLARGYSVTQTPAGALLKTTKQVQAGDKLTTRLQDGWVESEITQVTVAKKSRQKKVVTQ >Mature_458_residues SQSSASSIFTVSRLNQTVRELLEREMGQIWLTAEISNFSQPASGHWYFTLKDDRAQVRCAMFRNSNRRTTFRPQNGQQVL VRASITLYEPRGDYQLIAESMQPAGDGLLQQQFEQLKQQLAAEGLFDQSHKQPLPSPAKQVGVITSASGAALHDVLHVLQ RRDPSLPVIIYPTSVQGVDAPLQIVRAIQLANLRAECDVLIVGRGGGSLEDLWSFNDERVARAIFNSHIPIVSAVGHETD VTIADFVADLRAPTPSAAAELVSRNQIELVRQIQGQQQRMEMAMDYYLAQRTQQFTRLEHRLQQQHPHLRLARQQTLLLK LQRRLEESAQTQIRLLSKRTERLQQRLQQVQPQGQIHRYNQRVQQQEYRLRQAVERQLNGYRQRFGIACSQLEAVSPLAT LARGYSVTQTPAGALLKTTKQVQAGDKLTTRLQDGWVESEITQVTVAKKSRQKKVVTQ
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=454, Percent_Identity=72.2466960352423, Blast_Score=672, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 52036; Mature: 51905
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSSASSIFTVSRLNQTVRELLEREMGQIWLTAEISNFSQPASGHWYFTLKDDRAQVRC CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCHHHHH AMFRNSNRRTTFRPQNGQQVLVRASITLYEPRGDYQLIAESMQPAGDGLLQQQFEQLKQQ HHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH LAAEGLFDQSHKQPLPSPAKQVGVITSASGAALHDVLHVLQRRDPSLPVIIYPTSVQGVD HHHHCCCCCCCCCCCCCHHHHHCEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC APLQIVRAIQLANLRAECDVLIVGRGGGSLEDLWSFNDERVARAIFNSHIPIVSAVGHET HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCC DVTIADFVADLRAPTPSAAAELVSRNQIELVRQIQGQQQRMEMAMDYYLAQRTQQFTRLE CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HRLQQQHPHLRLARQQTLLLKLQRRLEESAQTQIRLLSKRTERLQQRLQQVQPQGQIHRY HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH NQRVQQQEYRLRQAVERQLNGYRQRFGIACSQLEAVSPLATLARGYSVTQTPAGALLKTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH KQVQAGDKLTTRLQDGWVESEITQVTVAKKSRQKKVVTQ HHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SQSSASSIFTVSRLNQTVRELLEREMGQIWLTAEISNFSQPASGHWYFTLKDDRAQVRC CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCHHHHH AMFRNSNRRTTFRPQNGQQVLVRASITLYEPRGDYQLIAESMQPAGDGLLQQQFEQLKQQ HHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH LAAEGLFDQSHKQPLPSPAKQVGVITSASGAALHDVLHVLQRRDPSLPVIIYPTSVQGVD HHHHCCCCCCCCCCCCCHHHHHCEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC APLQIVRAIQLANLRAECDVLIVGRGGGSLEDLWSFNDERVARAIFNSHIPIVSAVGHET HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCC DVTIADFVADLRAPTPSAAAELVSRNQIELVRQIQGQQQRMEMAMDYYLAQRTQQFTRLE CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HRLQQQHPHLRLARQQTLLLKLQRRLEESAQTQIRLLSKRTERLQQRLQQVQPQGQIHRY HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH NQRVQQQEYRLRQAVERQLNGYRQRFGIACSQLEAVSPLATLARGYSVTQTPAGALLKTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH KQVQAGDKLTTRLQDGWVESEITQVTVAKKSRQKKVVTQ HHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA