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The map label for this gene is ypjA [C]

Identifier: 170023533

GI number: 170023533

Start: 1413754

End: 1415118

Strand: Reverse

Name: ypjA [C]

Synonym: YPK_1287

Alternate gene names: 170023533

Gene position: 1415118-1413754 (Counterclockwise)

Preceding gene: 170023547

Following gene: 170023532

Centisome position: 30.18

GC content: 51.94

Gene sequence:

>1365_bases
ATGAAAAACAGTAATACTCTTAATACGCGTCTGCTACCACTGTCTATTTTAATTTCATCGTTGGTTTCTGGCGGGGCTAT
GGCTGTGTCACAAATAGCAACCACTGATATACCCGCAGCAGTAACACCAATAAAATCAACACCAACAGGTTCATTTGAGC
GGAATTCGGCTGGTACAAGTTTTGGATCAAATGTAGATGTAGATGTAATTGATAATACATCTACCGTACTCAACGCCAGT
GACTTCTCGCTGGCTGACAAAGCCACCGCGAACAACACCACCCTGACTGGCGGTACCTTCACCGCTGCAGGTGATGCCGC
GGTCACCGTACTCAACGCAAGTGACTTCTCGCTGGCTGACAAAGCCACCGCGAACAACACCACCCTGACTGACGGTACTT
TCACCGTTGCAGGTGATGCCGCGGTCACCGCGACGAACATGAGTGGCGGTAAATTTGCGGTTAAAGGCAAAGCCAAGATC
AAAGACACCCAACTCAGTGCAGGTAATTTCACTCTGGCTGAAAATGCCACAGCGAATGACACCACACTGAATGGCGGTAA
ATTTGACGTTTCGAACGAGGCTACAGCGACTAACACCACCATTAATAACGGCCTGTTTACGCTGAAAGATGGCGCTCACG
CGGACAGCACCACAGTCAATAGCGGCACCTTCGTCATGGCCGATCAATCTACGGCCAACGGCATCCAACTGGTAGACAGC
GCCTTCACACTCGCAAGCGGTGCTAAAGCCTCCGGTATCACCAAATTAACTGGCGGTCAGGCACAGGTAGCCGGTTCACT
GGAAAGCTTGAGCCTTACCGGTGGCCGCGCAGACTTTGCCAACAGCGCCAAAGCCTCTGGCCTGCTTGATATCAGCGCTG
ATAGCCAGATCATAATGAACCGCGGTGCAGATACCGAACAAGCGAACCTGAACCTGGCTGGCCGCCTTGAATTGCTCGCC
AGTGATGTTGCTCAGGCAGTGGCTCAGCCAGTTGCCCGTGCGGCCATGGAGTTATCAAATGCGCGTGCGGTCATGCCAGC
CCCTGCAATGCCAGTCCCTGCCACCGCACCGGTTGCACACTTCGCCCTCAACGATGTGGTTATGACCGGGGGCACTGTCG
ATATGAGCAACGCGAAAAATGCTCAACTGACCATGGCTTCACTGAATGGTACAGGGAACTTTAACCTCGGTTCTGTCATG
CAAAGCGATTCGGTCGCGCCATTAAATGTATCCGGTGACGCGAACGGTGACTTCATCATTGCAATGAATAGCAGCGGTCA
AGCACCAACTAACCTGAATGTGGTTAATACCAACGGTGGTGATGCACGCTTTGCCTTACCTACCTGCACAATAACTTTGC
AGTAA

Upstream 100 bases:

>100_bases
TTTTTTTGTGCCGGTATATTTTTCAACGGAATTACCTTGTCACCATTATTTTAAATGCGCCTCCTTTCTTTTGAATAACA
GTAAATAGGAAACACAGAAT

Downstream 100 bases:

>100_bases
AAGGCCGCGCCGCTAACTTCGACCAAACGTTAAACGGCATAACGTTGGGGGGCGATAATGACGGGCAATTTAGCCTCAAC
AACGGCGCAATCGCTCAAAA

Product: pertactin

Products: NA

Alternate protein names: Autotransporter; Autotransporter Protein; Outer Membrane Autotransporter; Pertactin

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MKNSNTLNTRLLPLSILISSLVSGGAMAVSQIATTDIPAAVTPIKSTPTGSFERNSAGTSFGSNVDVDVIDNTSTVLNAS
DFSLADKATANNTTLTGGTFTAAGDAAVTVLNASDFSLADKATANNTTLTDGTFTVAGDAAVTATNMSGGKFAVKGKAKI
KDTQLSAGNFTLAENATANDTTLNGGKFDVSNEATATNTTINNGLFTLKDGAHADSTTVNSGTFVMADQSTANGIQLVDS
AFTLASGAKASGITKLTGGQAQVAGSLESLSLTGGRADFANSAKASGLLDISADSQIIMNRGADTEQANLNLAGRLELLA
SDVAQAVAQPVARAAMELSNARAVMPAPAMPVPATAPVAHFALNDVVMTGGTVDMSNAKNAQLTMASLNGTGNFNLGSVM
QSDSVAPLNVSGDANGDFIIAMNSSGQAPTNLNVVNTNGGDARFALPTCTITLQ

Sequences:

>Translated_454_residues
MKNSNTLNTRLLPLSILISSLVSGGAMAVSQIATTDIPAAVTPIKSTPTGSFERNSAGTSFGSNVDVDVIDNTSTVLNAS
DFSLADKATANNTTLTGGTFTAAGDAAVTVLNASDFSLADKATANNTTLTDGTFTVAGDAAVTATNMSGGKFAVKGKAKI
KDTQLSAGNFTLAENATANDTTLNGGKFDVSNEATATNTTINNGLFTLKDGAHADSTTVNSGTFVMADQSTANGIQLVDS
AFTLASGAKASGITKLTGGQAQVAGSLESLSLTGGRADFANSAKASGLLDISADSQIIMNRGADTEQANLNLAGRLELLA
SDVAQAVAQPVARAAMELSNARAVMPAPAMPVPATAPVAHFALNDVVMTGGTVDMSNAKNAQLTMASLNGTGNFNLGSVM
QSDSVAPLNVSGDANGDFIIAMNSSGQAPTNLNVVNTNGGDARFALPTCTITLQ
>Mature_454_residues
MKNSNTLNTRLLPLSILISSLVSGGAMAVSQIATTDIPAAVTPIKSTPTGSFERNSAGTSFGSNVDVDVIDNTSTVLNAS
DFSLADKATANNTTLTGGTFTAAGDAAVTVLNASDFSLADKATANNTTLTDGTFTVAGDAAVTATNMSGGKFAVKGKAKI
KDTQLSAGNFTLAENATANDTTLNGGKFDVSNEATATNTTINNGLFTLKDGAHADSTTVNSGTFVMADQSTANGIQLVDS
AFTLASGAKASGITKLTGGQAQVAGSLESLSLTGGRADFANSAKASGLLDISADSQIIMNRGADTEQANLNLAGRLELLA
SDVAQAVAQPVARAAMELSNARAVMPAPAMPVPATAPVAHFALNDVVMTGGTVDMSNAKNAQLTMASLNGTGNFNLGSVM
QSDSVAPLNVSGDANGDFIIAMNSSGQAPTNLNVVNTNGGDARFALPTCTITLQ

Specific function: Unknown

COG id: COG3468

COG function: function code MU; Type V secretory pathway, adhesin AidA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45565; Mature: 45565

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSNTLNTRLLPLSILISSLVSGGAMAVSQIATTDIPAAVTPIKSTPTGSFERNSAGTS
CCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
FGSNVDVDVIDNTSTVLNASDFSLADKATANNTTLTGGTFTAAGDAAVTVLNASDFSLAD
CCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCEEEECCCEEEEEEECCCCCCCC
KATANNTTLTDGTFTVAGDAAVTATNMSGGKFAVKGKAKIKDTQLSAGNFTLAENATAND
CCCCCCCEEECCEEEEECCCEEEEECCCCCEEEEECCCEEEEEEECCCCEEEECCCCCCC
TTLNGGKFDVSNEATATNTTINNGLFTLKDGAHADSTTVNSGTFVMADQSTANGIQLVDS
CCCCCCEEECCCCCCCCCCEECCCEEEECCCCCCCCCEECCCEEEEECCCCCCCEEEEHH
AFTLASGAKASGITKLTGGQAQVAGSLESLSLTGGRADFANSAKASGLLDISADSQIIMN
HHHHCCCCCCCCEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEE
RGADTEQANLNLAGRLELLASDVAQAVAQPVARAAMELSNARAVMPAPAMPVPATAPVAH
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
FALNDVVMTGGTVDMSNAKNAQLTMASLNGTGNFNLGSVMQSDSVAPLNVSGDANGDFII
HEEEEEEEECCEEECCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCEEE
AMNSSGQAPTNLNVVNTNGGDARFALPTCTITLQ
EECCCCCCCCEEEEEECCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MKNSNTLNTRLLPLSILISSLVSGGAMAVSQIATTDIPAAVTPIKSTPTGSFERNSAGTS
CCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
FGSNVDVDVIDNTSTVLNASDFSLADKATANNTTLTGGTFTAAGDAAVTVLNASDFSLAD
CCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCEEEECCCEEEEEEECCCCCCCC
KATANNTTLTDGTFTVAGDAAVTATNMSGGKFAVKGKAKIKDTQLSAGNFTLAENATAND
CCCCCCCEEECCEEEEECCCEEEEECCCCCEEEEECCCEEEEEEECCCCEEEECCCCCCC
TTLNGGKFDVSNEATATNTTINNGLFTLKDGAHADSTTVNSGTFVMADQSTANGIQLVDS
CCCCCCEEECCCCCCCCCCEECCCEEEECCCCCCCCCEECCCEEEEECCCCCCCEEEEHH
AFTLASGAKASGITKLTGGQAQVAGSLESLSLTGGRADFANSAKASGLLDISADSQIIMN
HHHHCCCCCCCCEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEE
RGADTEQANLNLAGRLELLASDVAQAVAQPVARAAMELSNARAVMPAPAMPVPATAPVAH
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
FALNDVVMTGGTVDMSNAKNAQLTMASLNGTGNFNLGSVMQSDSVAPLNVSGDANGDFII
HEEEEEEEECCEEECCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCEEE
AMNSSGQAPTNLNVVNTNGGDARFALPTCTITLQ
EECCCCCCCCEEEEEECCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA