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The map label for this gene is 170022646

Identifier: 170022646

GI number: 170022646

Start: 426971

End: 428317

Strand: Direct

Name: 170022646

Synonym: YPK_0393

Alternate gene names: NA

Gene position: 426971-428317 (Clockwise)

Preceding gene: 170022645

Following gene: 170022647

Centisome position: 9.1

GC content: 51.3

Gene sequence:

>1347_bases
ATGCCAACCAAAAATCGAGTGATTTGGCGCGAAGGGCTGTTCATCAAACCGCAACATTTTCAACAACAGCAACGGCATAA
CGACTACCAGTTACAACGCCGGATTATCGCTCTGCAAGGGTATAGCTATGGTTTCAGTTCACTGATCCTGAATCAGGAGT
TATTGAAATTAGGGCGTATTGGCTTGACGGTCGCCAGTGGCAATATGGCTGATGGCACGGTGTTTGATATCCCTTATCAA
GACTATTCACCAAAGCCATTGGATGTACTGAATTGTAATGATGCGGCCAGCCGTGACATTTATCTGGCATTACCGATGCT
AAACGATGCCATTAATGAGGTGGCAGGCCAGCAGGGGCAAGCGCCGGGAACCCTTCGCTATCGTGAACACAGCGATGATG
TCCGCGATTTACATACCGAAGGGGGCGATGTCAGCCAGTTGGTACTGGCACAACTGGCACCGCGTTTGATGCAAGGCTCG
GAAGACCTCAGCGCATACTCGGTCCTGCCGCTGTGTCGGGTCAAAGAGAAACGGCCTGACGGTTCGCTGATCTTGGATGA
AGAGTTCATTCCCACCTGCACCACGCTCAGTGTCTCCACGCAGTTAAAAGGCTTTATGGATGAAGTCGAAGGGACATTGG
TTGAACGCGCCCAACTACTGGCGAAACGTATTGGTTCTCCCGGTCAGCAGGGGATCGCGGATGTGGCTGAATTTATGATG
TTGCAGGTCTTTAACCGGACACAGCCGCTCTTTACCCATTTGGCACATCAGGCGATTCTGCATCCAGAAGCGTTTTACCA
TCAGTTGGTACAAACCTGCGGTGAACTGCGCACGTTTACCGATGAATCTCGCTTAGCGGGCACCTTCCCGGTTTATAACC
ACGATAATTTGACCGACAGTTTTCAGCCGTTGTTTTTGGCGATGCGTCAGGCATTAAGCACCGTGCTCACACCGCGTGCC
ATCTCTATCCAGTTGCATATGCAGGCACACGGTATTCGCGTTGCGACCATTAATGATAGTGATCTATTGCGCAGTGCTGA
TTTTGTGCTGGCGGTTCGGGCGCAAATACCTCAAGAACAATTGCGTCGGCAGTTTGTTCAGCAAACCAAAATCACCTCAC
TTGAGAAAATACGCGATTTGGTCAGTGTCCAACTGCCCGGCGTCCCGTTGGTGGCACTGTCCGCCGCACCGCGCCAGCTC
CCTTACCACTCGGGATACACCTACTTCATGCTGGATCTGCAAAGCCCTGTATGGAAAGAAATCCAGCAAAGCAATGCGAT
TGCCTTCCACGTCTCGGGTGATTTCCCTGATCTGGACATGCAATTCTGGGCAATCAGGAGCAGCTAA

Upstream 100 bases:

>100_bases
GGAAGAAGATCATCAAAATAAAAGGGATCGGCCATAACTACCAGGTTTTGGTCCATGTCAGATCAAACGATGTCGATCTA
AGGAAAGAGGAAGAATAACC

Downstream 100 bases:

>100_bases
TGAAAACAGATGCTGTGACTGACAACACCCCTTTCCCCGCAGCGGAAGCGGTCACCTCCCATCGGCAGTATCAGCTACCG
CTACGTGGCGAAAGCTTGAA

Product: type VI secretion protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Protein ImpJ/VasE; Conserved Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein EvpM; Protein ImpJ; Type VI Secretion System Protein; Type VI Secretion System Protein ImpJ; Type VI Secretion; Type VI Secretion System Core Protein; T6ss M; Type VI Secretion Protein VasE; Temperature-Dependent Protein Secretion ImpJ

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQ
DYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGS
EDLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMM
LQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRA
ISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQL
PYHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS

Sequences:

>Translated_448_residues
MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQ
DYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGS
EDLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMM
LQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRA
ISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQL
PYHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS
>Mature_447_residues
PTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQD
YSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGSE
DLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMML
QVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRAI
SIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQLP
YHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50416; Mature: 50285

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRI
CCCCCCEEEECCCEECCHHHHHHHHCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCC
GLTVASGNMADGTVFDIPYQDYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQ
EEEEECCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHCCCCCC
APGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGSEDLSAYSVLPLCRVKEKRPD
CCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
GSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMM
CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDS
HHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
FQPLFLAMRQALSTVLTPRAISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQ
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEECCHHHHHHCCCEEEEHHHCCHHH
LRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQLPYHSGYTYFMLDLQSPVWKE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH
IQQSNAIAFHVSGDFPDLDMQFWAIRSS
HHHCCCEEEEECCCCCCCCEEEEEEECC
>Mature Secondary Structure 
PTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRI
CCCCCEEEECCCEECCHHHHHHHHCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCC
GLTVASGNMADGTVFDIPYQDYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQ
EEEEECCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHCCCCCC
APGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGSEDLSAYSVLPLCRVKEKRPD
CCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
GSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMM
CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDS
HHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
FQPLFLAMRQALSTVLTPRAISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQ
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEECCHHHHHHCCCEEEEHHHCCHHH
LRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQLPYHSGYTYFMLDLQSPVWKE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH
IQQSNAIAFHVSGDFPDLDMQFWAIRSS
HHHCCCEEEEECCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA