Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 170022578

GI number: 170022578

Start: 339280

End: 340401

Strand: Direct

Name: smf [H]

Synonym: YPK_0317

Alternate gene names: 170022578

Gene position: 339280-340401 (Clockwise)

Preceding gene: 170022572

Following gene: 170022579

Centisome position: 7.23

GC content: 48.48

Gene sequence:

>1122_bases
ATGTTAGCAGCAGAACTATGGCTACGGATGACTCAGGTTAAAGGGCTTGGAGTCGTGAAACGTAGTGCGTTGGCCAAGCG
ATTACTTGCCAGTGGTGATATTCATCCGGGGAGGTTAGCTGCCTACGGGCTAGATTCACAACAGTGTCATCAGTTTGCTC
AGTTGTCACCCCGTTATATTGCAGACACGCTAGAGTGGCTAAGTGACCCCAACCACCATTTACTCACTTATGGTGAGCCT
GGCTATCCACCCCGCTTAGTTCATATTGCTGGGGCACCGTTAGTCCTCTTTGTTTCCGGCGAACTTGATGTTCTCTATCG
CCCACAGATCGCAATGGTTGGTAGCCGTCATTTCAGCCACTATGGTGAGCAGTGGGGAAGATATTTTGCCTCAGAGTTGG
CTCGCACAGGGTTAGTTATCACTAGTGGTTTAGCTGTAGGCATCGACGGAATTTGTCATCAGGCGGCTCTGAATATTCAA
GGGAGAACTATTGCTGTGCTAGGGAGTGGGTTGGAGAACATATATCCACAGCGGCACAGTCGTTTGGCTAAAGAAATTGA
ATATCAAGGCGGCGCTTTGGTTTCTGAATTTTTAACGACGGCGTTACCTATTGCTGCTCATTTCCCCAGAAGAAATCGAA
TTATCAGCGGGCTAAGTGATGCTGTGTTAGTCGTTGAGGCCACTTTAAAAAGTGGCTCTTTGATTACCGCTCGTTATGCG
ATGGATCAAGGAAGAGATGTGTTCGCATTACCGGGGCCATTAGGCAGTGCTAGCAGCGAAGGAACACATTGGCTCATTCA
ACAAGGCGCTTATTTGGCAACGTCTGTTAAAGATGTCTCAGAGCAGGTCAGTGGTTCTTTGCAATGGTTATCATTGCCAG
AGGAAGTAATTATTTCTTCACCGAAGGAGCAAGTTGAATTGCCATTTGCTGATGTGTTGGCTAACGTAGGGGATGAGGTG
ACACCTGTTGATGTTGTCGCCGAACGTGCCGGCCAACCTGTGCAAGATATTGCCAGCAAATTGCTCGAGCTGGAGTTAGC
AGGGTGGATCGCAGCTGTACCCGGCGGCTATGTCCGAATAAGGAGGGCAGGCCATGTTCGACGTTCTAATTTACTTATTT
GA

Upstream 100 bases:

>100_bases
ATTAAATCTCTATTCTAGACATTTCTTGTTCTAATTGACAGCATCGTCTACCAATTGAACAAATTGGTGTCAACACCGGA
AAGTAAGCCAGGGAGGCGGT

Downstream 100 bases:

>100_bases
AACTTACATGCACAACGAACCGGAAATGCTTGTCGATCAGGACAAGATTACTGACGATCTTGCTGATGCAGGTTTCTACC
GTGAGGATATCAACAACGCC

Product: DNA protecting protein DprA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLAAELWLRMTQVKGLGVVKRSALAKRLLASGDIHPGRLAAYGLDSQQCHQFAQLSPRYIADTLEWLSDPNHHLLTYGEP
GYPPRLVHIAGAPLVLFVSGELDVLYRPQIAMVGSRHFSHYGEQWGRYFASELARTGLVITSGLAVGIDGICHQAALNIQ
GRTIAVLGSGLENIYPQRHSRLAKEIEYQGGALVSEFLTTALPIAAHFPRRNRIISGLSDAVLVVEATLKSGSLITARYA
MDQGRDVFALPGPLGSASSEGTHWLIQQGAYLATSVKDVSEQVSGSLQWLSLPEEVIISSPKEQVELPFADVLANVGDEV
TPVDVVAERAGQPVQDIASKLLELELAGWIAAVPGGYVRIRRAGHVRRSNLLI

Sequences:

>Translated_373_residues
MLAAELWLRMTQVKGLGVVKRSALAKRLLASGDIHPGRLAAYGLDSQQCHQFAQLSPRYIADTLEWLSDPNHHLLTYGEP
GYPPRLVHIAGAPLVLFVSGELDVLYRPQIAMVGSRHFSHYGEQWGRYFASELARTGLVITSGLAVGIDGICHQAALNIQ
GRTIAVLGSGLENIYPQRHSRLAKEIEYQGGALVSEFLTTALPIAAHFPRRNRIISGLSDAVLVVEATLKSGSLITARYA
MDQGRDVFALPGPLGSASSEGTHWLIQQGAYLATSVKDVSEQVSGSLQWLSLPEEVIISSPKEQVELPFADVLANVGDEV
TPVDVVAERAGQPVQDIASKLLELELAGWIAAVPGGYVRIRRAGHVRRSNLLI
>Mature_373_residues
MLAAELWLRMTQVKGLGVVKRSALAKRLLASGDIHPGRLAAYGLDSQQCHQFAQLSPRYIADTLEWLSDPNHHLLTYGEP
GYPPRLVHIAGAPLVLFVSGELDVLYRPQIAMVGSRHFSHYGEQWGRYFASELARTGLVITSGLAVGIDGICHQAALNIQ
GRTIAVLGSGLENIYPQRHSRLAKEIEYQGGALVSEFLTTALPIAAHFPRRNRIISGLSDAVLVVEATLKSGSLITARYA
MDQGRDVFALPGPLGSASSEGTHWLIQQGAYLATSVKDVSEQVSGSLQWLSLPEEVIISSPKEQVELPFADVLANVGDEV
TPVDVVAERAGQPVQDIASKLLELELAGWIAAVPGGYVRIRRAGHVRRSNLLI

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=374, Percent_Identity=53.7433155080214, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 40383; Mature: 40383

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAELWLRMTQVKGLGVVKRSALAKRLLASGDIHPGRLAAYGLDSQQCHQFAQLSPRYI
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCHHHH
ADTLEWLSDPNHHLLTYGEPGYPPRLVHIAGAPLVLFVSGELDVLYRPQIAMVGSRHFSH
HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEECCCEEEHHCHHHHH
YGEQWGRYFASELARTGLVITSGLAVGIDGICHQAALNIQGRTIAVLGSGLENIYPQRHS
HHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCHHHHH
RLAKEIEYQGGALVSEFLTTALPIAAHFPRRNRIISGLSDAVLVVEATLKSGSLITARYA
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEECCCCCEEEEEEH
MDQGRDVFALPGPLGSASSEGTHWLIQQGAYLATSVKDVSEQVSGSLQWLSLPEEVIISS
HCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHHHCC
PKEQVELPFADVLANVGDEVTPVDVVAERAGQPVQDIASKLLELELAGWIAAVPGGYVRI
CHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
RRAGHVRRSNLLI
EECCCCCCCCCCC
>Mature Secondary Structure
MLAAELWLRMTQVKGLGVVKRSALAKRLLASGDIHPGRLAAYGLDSQQCHQFAQLSPRYI
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCHHHH
ADTLEWLSDPNHHLLTYGEPGYPPRLVHIAGAPLVLFVSGELDVLYRPQIAMVGSRHFSH
HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEECCCEEEHHCHHHHH
YGEQWGRYFASELARTGLVITSGLAVGIDGICHQAALNIQGRTIAVLGSGLENIYPQRHS
HHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCHHHHH
RLAKEIEYQGGALVSEFLTTALPIAAHFPRRNRIISGLSDAVLVVEATLKSGSLITARYA
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEECCCCCEEEEEEH
MDQGRDVFALPGPLGSASSEGTHWLIQQGAYLATSVKDVSEQVSGSLQWLSLPEEVIISS
HCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHHHCC
PKEQVELPFADVLANVGDEVTPVDVVAERAGQPVQDIASKLLELELAGWIAAVPGGYVRI
CHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
RRAGHVRRSNLLI
EECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]