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The map label for this gene is yaaJ [C]

Identifier: 169834071

GI number: 169834071

Start: 470010

End: 471332

Strand: Direct

Name: yaaJ [C]

Synonym: SPH_0516

Alternate gene names: 169834071

Gene position: 470010-471332 (Clockwise)

Preceding gene: 169832578

Following gene: 169833484

Centisome position: 20.93

GC content: 45.35

Gene sequence:

>1323_bases
ATGTTAGAATTGCTTAAATCAATCGATGCTTTTGCTTGGGGACCGCCCCTCTTGATTTTATTGGTCGGAACAGGGATTTA
CCTAACTATGCGGCTAGGACTCTTGCAGGTTTTGCGTCTGCCCAAGGCCTTTCAGCTTATTTTTATCCAGGATAAGGGAC
ATGGTGATGTATCCAGTTTTGCAGCTCTGTGTACAGCCTTGGCATCAACTGTTGGAACAGGAAATATCATAGGAGTTGCG
ACGGCTATCAAGGTTGGTGGACCAGGAGCTCTATTTTGGATGTGGATGGCGGCTTTCTTTGGAATGGCTACCAAGTATGC
GGAAGGACTCTTGGCCATCAAATACCGCACCAAGGACGACCATGGTGCAGTAGCGGGAGGTCCCATGCACTATATCCTTC
TAGGGATGGGAGAAAAGTGGCGACCACTTGCTGTTTTGTTTGCAGTAGCAGGAGTATTGGTTGCTCTCTTGGGAATCGGA
ACCTTCACCCAAGTCAACTCGATTACAGAATCTATCCAAAATACAACGACGATTTCGCCAGCCATCACAGCTCTCGTCTT
GTCTGTCTTTGTAGCGATTGCAGTCTTTGGTGGACTCAAGTCTATTTCTAAGGTTTCAACTACTGTTGTTCCTTTTATGG
CCCTCATTTATATCTTAGGAACTCTTACAGTTATTTTCTTTAATATCGGAAAAATCCCTGGCACAATCGCTTTAGTCTTT
ACCTCAGCTTTTAGTCCCCTTGCTGCGGTAGGTGGATTTGCTGGTGCTAGCGTTCGGATGGCTATTCAAAATGGTGTGGC
GCGTGGTGTGTTCTCAAACGAATCTGGTCTGGGTTCTGCTCCTATTGCAGCTGCAGCTGCCAAGACAAATGAACCAGTAG
AGCAAGGTTTGATTTCCATGACAGGAACCTTTATTGATACCCTCATCATTTGTACTCTAACTGGTTTGACCATCTTGGTA
ACTGGAGTTTGGAGTGGTGACTTGAATGGGGTTGCCTTGACTCAGTCAGCTTTCTCAACAGTCTTTTCACACTTTGGGCC
TGCCCTCTTGACCATCTTCCTTGTACTTTTTGCCTTTACAACGATTCTAGGTTGGAACTATTACGGAGAACGCTGTTTTG
AGTTCCTCTTTGGGGTTCGCTTTATCTGGCTCTACCGTGTGGTTTTTGTGCTCATGGTCTTGTTAGGAGGATTTATCGAG
TTGGATATGGTCTGGATTATCGCAGATATCGTTAACGCCTTGATGGCTCTGCCAAACTTGATTGCCCTCTTGGTCATGTC
GCCAGTCGTTATTGCTGAAACTAAAAAGTATTTTGACAAATAA

Upstream 100 bases:

>100_bases
AGGATAGACCGCTTTTTAGCATTTATTTATCTAAGCATTCCAGAGTACATGTATCTTGCATGTGCTCTTTCTTTTGGGGT
TGAAACGATAGGAGAAGGAA

Downstream 100 bases:

>100_bases
TGGAATCACACAGCTCGTGTGATTTTTTTGCCTATAAATAATTTTTATCAGCCTGATATATAATATATATTATGCAAGTG
ATTGGAAGTGTGATAAACTA

Product: D-alanine glycine permease

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MLELLKSIDAFAWGPPLLILLVGTGIYLTMRLGLLQVLRLPKAFQLIFIQDKGHGDVSSFAALCTALASTVGTGNIIGVA
TAIKVGGPGALFWMWMAAFFGMATKYAEGLLAIKYRTKDDHGAVAGGPMHYILLGMGEKWRPLAVLFAVAGVLVALLGIG
TFTQVNSITESIQNTTTISPAITALVLSVFVAIAVFGGLKSISKVSTTVVPFMALIYILGTLTVIFFNIGKIPGTIALVF
TSAFSPLAAVGGFAGASVRMAIQNGVARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTLIICTLTGLTILV
TGVWSGDLNGVALTQSAFSTVFSHFGPALLTIFLVLFAFTTILGWNYYGERCFEFLFGVRFIWLYRVVFVLMVLLGGFIE
LDMVWIIADIVNALMALPNLIALLVMSPVVIAETKKYFDK

Sequences:

>Translated_440_residues
MLELLKSIDAFAWGPPLLILLVGTGIYLTMRLGLLQVLRLPKAFQLIFIQDKGHGDVSSFAALCTALASTVGTGNIIGVA
TAIKVGGPGALFWMWMAAFFGMATKYAEGLLAIKYRTKDDHGAVAGGPMHYILLGMGEKWRPLAVLFAVAGVLVALLGIG
TFTQVNSITESIQNTTTISPAITALVLSVFVAIAVFGGLKSISKVSTTVVPFMALIYILGTLTVIFFNIGKIPGTIALVF
TSAFSPLAAVGGFAGASVRMAIQNGVARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTLIICTLTGLTILV
TGVWSGDLNGVALTQSAFSTVFSHFGPALLTIFLVLFAFTTILGWNYYGERCFEFLFGVRFIWLYRVVFVLMVLLGGFIE
LDMVWIIADIVNALMALPNLIALLVMSPVVIAETKKYFDK
>Mature_440_residues
MLELLKSIDAFAWGPPLLILLVGTGIYLTMRLGLLQVLRLPKAFQLIFIQDKGHGDVSSFAALCTALASTVGTGNIIGVA
TAIKVGGPGALFWMWMAAFFGMATKYAEGLLAIKYRTKDDHGAVAGGPMHYILLGMGEKWRPLAVLFAVAGVLVALLGIG
TFTQVNSITESIQNTTTISPAITALVLSVFVAIAVFGGLKSISKVSTTVVPFMALIYILGTLTVIFFNIGKIPGTIALVF
TSAFSPLAAVGGFAGASVRMAIQNGVARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTLIICTLTGLTILV
TGVWSGDLNGVALTQSAFSTVFSHFGPALLTIFLVLFAFTTILGWNYYGERCFEFLFGVRFIWLYRVVFVLMVLLGGFIE
LDMVWIIADIVNALMALPNLIALLVMSPVVIAETKKYFDK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=449, Percent_Identity=38.0846325167038, Blast_Score=269, Evalue=3e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 46707; Mature: 46707

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLKSIDAFAWGPPLLILLVGTGIYLTMRLGLLQVLRLPKAFQLIFIQDKGHGDVSSF
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
AALCTALASTVGTGNIIGVATAIKVGGPGALFWMWMAAFFGMATKYAEGLLAIKYRTKDD
HHHHHHHHHHCCCCCEEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
HGAVAGGPMHYILLGMGEKWRPLAVLFAVAGVLVALLGIGTFTQVNSITESIQNTTTISP
CCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
AITALVLSVFVAIAVFGGLKSISKVSTTVVPFMALIYILGTLTVIFFNIGKIPGTIALVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TSAFSPLAAVGGFAGASVRMAIQNGVARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISM
HHHHHHHHHHCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHH
TGTFIDTLIICTLTGLTILVTGVWSGDLNGVALTQSAFSTVFSHFGPALLTIFLVLFAFT
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHH
TILGWNYYGERCFEFLFGVRFIWLYRVVFVLMVLLGGFIELDMVWIIADIVNALMALPNL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IALLVMSPVVIAETKKYFDK
HHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MLELLKSIDAFAWGPPLLILLVGTGIYLTMRLGLLQVLRLPKAFQLIFIQDKGHGDVSSF
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
AALCTALASTVGTGNIIGVATAIKVGGPGALFWMWMAAFFGMATKYAEGLLAIKYRTKDD
HHHHHHHHHHCCCCCEEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
HGAVAGGPMHYILLGMGEKWRPLAVLFAVAGVLVALLGIGTFTQVNSITESIQNTTTISP
CCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
AITALVLSVFVAIAVFGGLKSISKVSTTVVPFMALIYILGTLTVIFFNIGKIPGTIALVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TSAFSPLAAVGGFAGASVRMAIQNGVARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISM
HHHHHHHHHHCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHH
TGTFIDTLIICTLTGLTILVTGVWSGDLNGVALTQSAFSTVFSHFGPALLTIFLVLFAFT
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHH
TILGWNYYGERCFEFLFGVRFIWLYRVVFVLMVLLGGFIELDMVWIIADIVNALMALPNL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IALLVMSPVVIAETKKYFDK
HHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]