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The map label for this gene is ygbD [C]

Identifier: 169824207

GI number: 169824207

Start: 577026

End: 578363

Strand: Direct

Name: ygbD [C]

Synonym: FMG_0510

Alternate gene names: 169824207

Gene position: 577026-578363 (Clockwise)

Preceding gene: 169824205

Following gene: 169824209

Centisome position: 32.1

GC content: 32.81

Gene sequence:

>1338_bases
ATGAGTAAAATAGTTTTAATTGGAGCTAACCATGCAGGTACAGCTTGTGCAAACACAATATTGGACAATTACAAAGATGA
AGAATTAGTAATTTTTGATCAAAACTCCAATATTTCATTCTTAGGATGTGGAATGGCATTGTGGATTGGAAAACAAATTA
AAGGCCCAGAAAAATTATTTTATTGTAGCAAAGAGGTTTTCGAACAAAAAGGCGCGACAGTTCATATGGAAACGAAAGTA
GAAAACATCGACTACGACAAAAAAATTGTTTATGCAAAAGACAAAAACGGAAAAGAAATTCAAGAATCTTACGACAAATT
AGTATTAGCTACAGGATCTCAACCAATTTTACCAAACATTGAAGGAATGGATTTGGAAAATGTTCAAAAAGTTAAAATTT
TCCAAGATGCACAATCAGTTATTGACAAGATAAATCACGAAGAAATCAAAAAAGTTGTAGTAGTAGGAGCTGGCTACATA
GGAACAGAACTTGCAGAAGCTTTCAAGAGATTAGGAAAAGAATCTACATTGATTGAACACGGAGATACGGTGTTAAGAGG
CTATTACGATGATAAATTCTGCAAAAAAATGGAAGATAACCTAAGAGATCACGGTGTAAATTTAGTATTTAATGAAGAAG
TTGTAAAATTAGAAGGAACTGATGGCAAAGTAAATAAGGTTATAACTGATAAAGGTGAATACGATTGTGACATGGTAATA
ATGTCTATAGGATTCAAACCAAACAGCTCACTTGCAAAAGATCATTTGAAATTAAACGATCATAAAGCAATAATCACTGA
CAAACATCAACAAACTTCTGATGAAAATGTATTTGCAGTTGGAGATTCAACAGTTATTTTCAACAACGCAACAGGAAAAT
TTGAATACGTTGCATTGGCTACAAATGCTGTAAGAAGTGGTATAGTAGCTGGTCACAATGTTTGTGGAACAAAATTAGAA
TCAAACGGTGTGCAAGGATCAAACGGAATTAAGATTTACGATTTGTGCATGGTATCAACAGGTTTAACAGTTAGAAATGC
TGAAAAATTGGGAATGGAAGTTGAATACACTGATTTCACAGATTTACAAAAGCCACCATTTATGGAAGAAAACAACAAAG
AAGTTACTATCAGAATTGTTTACGACAAAAATTCACGCGAAATAAAAGGTTGTCAAATAATGAGTGAATATGATATTTCA
ATGATGATTCACATGTTCAGCTTGGCAATTCAAGAACACGTTACAATCGACAAACTAGCTCTAACTGATATATTCTTCTT
GCCACATTACAACCAACCATACAACTATGTAACTATGGCTGCTATTCAAGCATTATAA

Upstream 100 bases:

>100_bases
TGATATAATTATAGCGTAAAGATTTGTTAATTAACAAACAAAAATTTTTTACTTATTAACCCTACAACATTAGTAGGAAA
TAAAAAAAGGAGGTAACATA

Downstream 100 bases:

>100_bases
CAAAAAATTAGCGACTACTTTTATAGTAGCCGCTTTTTTTATTTAGCCAAGAGCAACATCTAAAATCATCATTATGATAA
ATCCAATTATAATTCCGTAA

Product: NADH oxidase

Products: NA

Alternate protein names: NOXase [H]

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSKIVLIGANHAGTACANTILDNYKDEELVIFDQNSNISFLGCGMALWIGKQIKGPEKLFYCSKEVFEQKGATVHMETKV
ENIDYDKKIVYAKDKNGKEIQESYDKLVLATGSQPILPNIEGMDLENVQKVKIFQDAQSVIDKINHEEIKKVVVVGAGYI
GTELAEAFKRLGKESTLIEHGDTVLRGYYDDKFCKKMEDNLRDHGVNLVFNEEVVKLEGTDGKVNKVITDKGEYDCDMVI
MSIGFKPNSSLAKDHLKLNDHKAIITDKHQQTSDENVFAVGDSTVIFNNATGKFEYVALATNAVRSGIVAGHNVCGTKLE
SNGVQGSNGIKIYDLCMVSTGLTVRNAEKLGMEVEYTDFTDLQKPPFMEENNKEVTIRIVYDKNSREIKGCQIMSEYDIS
MMIHMFSLAIQEHVTIDKLALTDIFFLPHYNQPYNYVTMAAIQAL

Sequences:

>Translated_445_residues
MSKIVLIGANHAGTACANTILDNYKDEELVIFDQNSNISFLGCGMALWIGKQIKGPEKLFYCSKEVFEQKGATVHMETKV
ENIDYDKKIVYAKDKNGKEIQESYDKLVLATGSQPILPNIEGMDLENVQKVKIFQDAQSVIDKINHEEIKKVVVVGAGYI
GTELAEAFKRLGKESTLIEHGDTVLRGYYDDKFCKKMEDNLRDHGVNLVFNEEVVKLEGTDGKVNKVITDKGEYDCDMVI
MSIGFKPNSSLAKDHLKLNDHKAIITDKHQQTSDENVFAVGDSTVIFNNATGKFEYVALATNAVRSGIVAGHNVCGTKLE
SNGVQGSNGIKIYDLCMVSTGLTVRNAEKLGMEVEYTDFTDLQKPPFMEENNKEVTIRIVYDKNSREIKGCQIMSEYDIS
MMIHMFSLAIQEHVTIDKLALTDIFFLPHYNQPYNYVTMAAIQAL
>Mature_444_residues
SKIVLIGANHAGTACANTILDNYKDEELVIFDQNSNISFLGCGMALWIGKQIKGPEKLFYCSKEVFEQKGATVHMETKVE
NIDYDKKIVYAKDKNGKEIQESYDKLVLATGSQPILPNIEGMDLENVQKVKIFQDAQSVIDKINHEEIKKVVVVGAGYIG
TELAEAFKRLGKESTLIEHGDTVLRGYYDDKFCKKMEDNLRDHGVNLVFNEEVVKLEGTDGKVNKVITDKGEYDCDMVIM
SIGFKPNSSLAKDHLKLNDHKAIITDKHQQTSDENVFAVGDSTVIFNNATGKFEYVALATNAVRSGIVAGHNVCGTKLES
NGVQGSNGIKIYDLCMVSTGLTVRNAEKLGMEVEYTDFTDLQKPPFMEENNKEVTIRIVYDKNSREIKGCQIMSEYDISM
MIHMFSLAIQEHVTIDKLALTDIFFLPHYNQPYNYVTMAAIQAL

Specific function: Catalyzes the four-electron reduction of molecular oxygen to water [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI21389617, Length=285, Percent_Identity=26.6666666666667, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI226437568, Length=285, Percent_Identity=26.6666666666667, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI65787454, Length=285, Percent_Identity=26.6666666666667, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4757732, Length=290, Percent_Identity=26.2068965517241, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI22202629, Length=290, Percent_Identity=26.2068965517241, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1789065, Length=308, Percent_Identity=26.9480519480519, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789915, Length=216, Percent_Identity=30.0925925925926, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789765, Length=299, Percent_Identity=23.7458193979933, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082354, Length=341, Percent_Identity=24.3401759530792, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559934, Length=219, Percent_Identity=28.310502283105, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6325166, Length=212, Percent_Identity=33.4905660377358, Blast_Score=87, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24639257, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI281359715, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281359713, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639250, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18543267, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639252, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585130, Length=222, Percent_Identity=21.6216216216216, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR004099
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]

EC number: =1.6.99.3 [H]

Molecular weight: Translated: 49781; Mature: 49650

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIVLIGANHAGTACANTILDNYKDEELVIFDQNSNISFLGCGMALWIGKQIKGPEKLF
CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCEEEECCCCCCCHHHH
YCSKEVFEQKGATVHMETKVENIDYDKKIVYAKDKNGKEIQESYDKLVLATGSQPILPNI
HHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHCEEEEECCCCCCCCCC
EGMDLENVQKVKIFQDAQSVIDKINHEEIKKVVVVGAGYIGTELAEAFKRLGKESTLIEH
CCCCCCCCCEEHHHHHHHHHHHHCCHHHEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEC
GDTVLRGYYDDKFCKKMEDNLRDHGVNLVFNEEVVKLEGTDGKVNKVITDKGEYDCDMVI
CCEEEECCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEE
MSIGFKPNSSLAKDHLKLNDHKAIITDKHQQTSDENVFAVGDSTVIFNNATGKFEYVALA
EEECCCCCCCHHHHHEEECCCEEEEECCCCCCCCCCEEEECCCEEEEECCCCCEEEEEEE
TNAVRSGIVAGHNVCGTKLESNGVQGSNGIKIYDLCMVSTGLTVRNAEKLGMEVEYTDFT
HHHHHHCCCCCCCCCCCEECCCCCCCCCCEEEEEEEEEECCCEEECHHHHCCEEEECCCC
DLQKPPFMEENNKEVTIRIVYDKNSREIKGCQIMSEYDISMMIHMFSLAIQEHVTIDKLA
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHEE
LTDIFFLPHYNQPYNYVTMAAIQAL
EEEEEEECCCCCCCCCEEHEEECCC
>Mature Secondary Structure 
SKIVLIGANHAGTACANTILDNYKDEELVIFDQNSNISFLGCGMALWIGKQIKGPEKLF
CEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCEEEECCCCCCCHHHH
YCSKEVFEQKGATVHMETKVENIDYDKKIVYAKDKNGKEIQESYDKLVLATGSQPILPNI
HHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHCEEEEECCCCCCCCCC
EGMDLENVQKVKIFQDAQSVIDKINHEEIKKVVVVGAGYIGTELAEAFKRLGKESTLIEH
CCCCCCCCCEEHHHHHHHHHHHHCCHHHEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEC
GDTVLRGYYDDKFCKKMEDNLRDHGVNLVFNEEVVKLEGTDGKVNKVITDKGEYDCDMVI
CCEEEECCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEE
MSIGFKPNSSLAKDHLKLNDHKAIITDKHQQTSDENVFAVGDSTVIFNNATGKFEYVALA
EEECCCCCCCHHHHHEEECCCEEEEECCCCCCCCCCEEEECCCEEEEECCCCCEEEEEEE
TNAVRSGIVAGHNVCGTKLESNGVQGSNGIKIYDLCMVSTGLTVRNAEKLGMEVEYTDFT
HHHHHHCCCCCCCCCCCEECCCCCCCCCCEEEEEEEEEECCCEEECHHHHCCEEEECCCC
DLQKPPFMEENNKEVTIRIVYDKNSREIKGCQIMSEYDISMMIHMFSLAIQEHVTIDKLA
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHEE
LTDIFFLPHYNQPYNYVTMAAIQAL
EEEEEEECCCCCCCCCEEHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA