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The map label for this gene is rbcR [H]

Identifier: 169824173

GI number: 169824173

Start: 535002

End: 535901

Strand: Direct

Name: rbcR [H]

Synonym: FMG_0476

Alternate gene names: 169824173

Gene position: 535002-535901 (Clockwise)

Preceding gene: 169824170

Following gene: 169824176

Centisome position: 29.76

GC content: 29.33

Gene sequence:

>900_bases
ATGGATATTAGCAAATTAGAATCTTTTTTAGTTTTAGCAGACTGCAAAAGTTTTACTAAAACAGCAGAACTTAGGTATTT
ATCTCAGCCGGCAATAAGTAAACACATAGATAGTTTGGAGCAGGAACTCGGCGTATTTTTATTCGATAGAAATGGTAAAA
CTGTTAGCCTCACAATACAGGGAAGACATTTCATAAAATATGCAGAATCTATAGTTAAAATATATCAAAAATCACAAGAA
CTAATTAGACAAATTGAAGATCTCAACCAAGGAACACTTTACTTTGGTTCAACAAACTTTATAGGAATTTATCTGATGCC
AAAATTTATTAAAGCCTTCCAAGACAAATACCCAAAGATTAATGTAAATATGACAGTTGGCTCCTCAAAAGACCTATTTA
AAAAACTCGAAAAAAATGAAATTGAATTTGTATTTTTGTCTCATTATGTAAAAATTGACACAAACAAATATATTTCCAAG
CCATTTTTTACAGATGAAATGGTGTTGGTGGTAAGTAGTAAAAACAAACTGGCAGAAAAATCTACATGCAGTCTCTCAGA
CATAAAAGATCAAGTATTTATTACAAAATCACAAACATCTTCTCTATATAAATTTTTAGAATCTTGCGTTGTTGATGTAA
AATTTAAAAAAGAACTTATAATAGATAATCAAGAAGCAATAAAAAAAGCAGTTGTAGAAAATGCAGGAGTTTCTATTATG
TCAAAAAAATCAGCTCAACTAGAAGAGGAAGCTGGACTAATAAAGTGCATAAAAATTGTAGATTGCGATTTCAAAAGACA
AATAAACCTAGTTTATGATAAAAATTTACACATAACTCCAGCAGGCCAAGCCTTTTTTGATGTCTTGGATACCTTTAATA
ATCTTGAATTAGGAAAATAA

Upstream 100 bases:

>100_bases
CTTAATTATATTACACGGATAACTATAACACAATTCGATTTTATTCTTAAAACAATAACATTATGTTATAATAGATTTAG
AAAAATTTAGAGGTGAACAA

Downstream 100 bases:

>100_bases
AAAAGAGATAACTCACAACGAGTTATCTCTTAATTTAATTATTGAATTATTAGAAAGCTTTGAATCTTTCTACTTTATCC
TTGTCGATTCCATGTTTTTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDISKLESFLVLADCKSFTKTAELRYLSQPAISKHIDSLEQELGVFLFDRNGKTVSLTIQGRHFIKYAESIVKIYQKSQE
LIRQIEDLNQGTLYFGSTNFIGIYLMPKFIKAFQDKYPKINVNMTVGSSKDLFKKLEKNEIEFVFLSHYVKIDTNKYISK
PFFTDEMVLVVSSKNKLAEKSTCSLSDIKDQVFITKSQTSSLYKFLESCVVDVKFKKELIIDNQEAIKKAVVENAGVSIM
SKKSAQLEEEAGLIKCIKIVDCDFKRQINLVYDKNLHITPAGQAFFDVLDTFNNLELGK

Sequences:

>Translated_299_residues
MDISKLESFLVLADCKSFTKTAELRYLSQPAISKHIDSLEQELGVFLFDRNGKTVSLTIQGRHFIKYAESIVKIYQKSQE
LIRQIEDLNQGTLYFGSTNFIGIYLMPKFIKAFQDKYPKINVNMTVGSSKDLFKKLEKNEIEFVFLSHYVKIDTNKYISK
PFFTDEMVLVVSSKNKLAEKSTCSLSDIKDQVFITKSQTSSLYKFLESCVVDVKFKKELIIDNQEAIKKAVVENAGVSIM
SKKSAQLEEEAGLIKCIKIVDCDFKRQINLVYDKNLHITPAGQAFFDVLDTFNNLELGK
>Mature_299_residues
MDISKLESFLVLADCKSFTKTAELRYLSQPAISKHIDSLEQELGVFLFDRNGKTVSLTIQGRHFIKYAESIVKIYQKSQE
LIRQIEDLNQGTLYFGSTNFIGIYLMPKFIKAFQDKYPKINVNMTVGSSKDLFKKLEKNEIEFVFLSHYVKIDTNKYISK
PFFTDEMVLVVSSKNKLAEKSTCSLSDIKDQVFITKSQTSSLYKFLESCVVDVKFKKELIIDNQEAIKKAVVENAGVSIM
SKKSAQLEEEAGLIKCIKIVDCDFKRQINLVYDKNLHITPAGQAFFDVLDTFNNLELGK

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=24.2320819112628, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790399, Length=278, Percent_Identity=22.6618705035971, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI157672245, Length=281, Percent_Identity=23.8434163701068, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=22.6027397260274, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787530, Length=246, Percent_Identity=22.3577235772358, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=24.6963562753036, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=30.6122448979592, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=306, Percent_Identity=21.5686274509804, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787806, Length=311, Percent_Identity=19.935691318328, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=21.4876033057851, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994962, Length=180, Percent_Identity=24.4444444444444, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=26.8965517241379, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367136, Length=283, Percent_Identity=21.5547703180212, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=220, Percent_Identity=24.0909090909091, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=134, Percent_Identity=23.8805970149254, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87082132, Length=301, Percent_Identity=19.9335548172757, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34165; Mature: 34165

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISKLESFLVLADCKSFTKTAELRYLSQPAISKHIDSLEQELGVFLFDRNGKTVSLTIQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCCEEEEEEC
GRHFIKYAESIVKIYQKSQELIRQIEDLNQGTLYFGSTNFIGIYLMPKFIKAFQDKYPKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEHHHHHHHHHHCCCEE
NVNMTVGSSKDLFKKLEKNEIEFVFLSHYVKIDTNKYISKPFFTDEMVLVVSSKNKLAEK
EEEEEECCCHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHH
STCSLSDIKDQVFITKSQTSSLYKFLESCVVDVKFKKELIIDNQEAIKKAVVENAGVSIM
CCCCHHHCCCEEEEEECHHHHHHHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHCCCCEEE
SKKSAQLEEEAGLIKCIKIVDCDFKRQINLVYDKNLHITPAGQAFFDVLDTFNNLELGK
ECCHHHHHHHCCCEEEHHHHCCCCHHCEEEEEECCEEEEECHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDISKLESFLVLADCKSFTKTAELRYLSQPAISKHIDSLEQELGVFLFDRNGKTVSLTIQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCCEEEEEEC
GRHFIKYAESIVKIYQKSQELIRQIEDLNQGTLYFGSTNFIGIYLMPKFIKAFQDKYPKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEHHHHHHHHHHCCCEE
NVNMTVGSSKDLFKKLEKNEIEFVFLSHYVKIDTNKYISKPFFTDEMVLVVSSKNKLAEK
EEEEEECCCHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHH
STCSLSDIKDQVFITKSQTSSLYKFLESCVVDVKFKKELIIDNQEAIKKAVVENAGVSIM
CCCCHHHCCCEEEEEECHHHHHHHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHCCCCEEE
SKKSAQLEEEAGLIKCIKIVDCDFKRQINLVYDKNLHITPAGQAFFDVLDTFNNLELGK
ECCHHHHHHHCCCEEEHHHHCCCCHHCEEEEEECCEEEEECHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA