Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 169824170

GI number: 169824170

Start: 531592

End: 532047

Strand: Direct

Name: nifU [H]

Synonym: FMG_0473

Alternate gene names: 169824170

Gene position: 531592-532047 (Clockwise)

Preceding gene: 169824169

Following gene: 169824173

Centisome position: 29.57

GC content: 34.87

Gene sequence:

>456_bases
TTGGAACTAGGTAGTTTATATACAGAATTAATATTGGAAAAAAGCAGGGATAAATCAAACAGACGTGAATTGGAACATCC
AACTCATTGTGAGTTGGGACACAATCCTAGCTGTGGAGATGAAATCACATTGCAATTGAAAGTACAAGATGACACAATTG
AAGACATTGCATACACTGGAATGGGATGTGCTATATCACAAGCATCTACATCTATTATGTGCGATGTAATCAAAGGTAAA
TCTGTAAATGAAGCAATAGATTTGTGCAACAAATTCATCTCAATGATAAAAGGAGAAATCACTGACAGAAAAGAGCTAAA
AGTTCTGAAAGATGCAGTGTGCTTCCAAAGCATATCCACATTACCAGCGAGAGTAAAATGTGCTGTTCTTTCATGGTACA
CATTAAAAGATATGCTTGAAAATGACAAATCAGAAGGATCATTTATTCCTGATTAA

Upstream 100 bases:

>100_bases
ACGAATTTCTCATGCAGAGCAAGCTTTGCATTCTATAATACATTTGAAGAAGTTGACTTTTTCATTGAACATCTTGAAGA
CGTAAGGAGATTGATGAGAA

Downstream 100 bases:

>100_bases
TAGACAATAAAATAGATAATAAATTTTCAACTGGTGAAACGTGGGTTTCATCAGTTTTTTTATTGTGAAATAAAATAGCC
CCTCAATCTGTATTTCAGAT

Product: iron-sulfur cofactor synthesis protein NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MELGSLYTELILEKSRDKSNRRELEHPTHCELGHNPSCGDEITLQLKVQDDTIEDIAYTGMGCAISQASTSIMCDVIKGK
SVNEAIDLCNKFISMIKGEITDRKELKVLKDAVCFQSISTLPARVKCAVLSWYTLKDMLENDKSEGSFIPD

Sequences:

>Translated_151_residues
MELGSLYTELILEKSRDKSNRRELEHPTHCELGHNPSCGDEITLQLKVQDDTIEDIAYTGMGCAISQASTSIMCDVIKGK
SVNEAIDLCNKFISMIKGEITDRKELKVLKDAVCFQSISTLPARVKCAVLSWYTLKDMLENDKSEGSFIPD
>Mature_151_residues
MELGSLYTELILEKSRDKSNRRELEHPTHCELGHNPSCGDEITLQLKVQDDTIEDIAYTGMGCAISQASTSIMCDVIKGK
SVNEAIDLCNKFISMIKGEITDRKELKVLKDAVCFQSISTLPARVKCAVLSWYTLKDMLENDKSEGSFIPD

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16848; Mature: 16848

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELGSLYTELILEKSRDKSNRRELEHPTHCELGHNPSCGDEITLQLKVQDDTIEDIAYTG
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHC
MGCAISQASTSIMCDVIKGKSVNEAIDLCNKFISMIKGEITDRKELKVLKDAVCFQSIST
CCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
LPARVKCAVLSWYTLKDMLENDKSEGSFIPD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MELGSLYTELILEKSRDKSNRRELEHPTHCELGHNPSCGDEITLQLKVQDDTIEDIAYTG
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHC
MGCAISQASTSIMCDVIKGKSVNEAIDLCNKFISMIKGEITDRKELKVLKDAVCFQSIST
CCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
LPARVKCAVLSWYTLKDMLENDKSEGSFIPD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]