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The map label for this gene is cobD [H]

Identifier: 169628986

GI number: 169628986

Start: 1896235

End: 1897179

Strand: Direct

Name: cobD [H]

Synonym: MAB_1898

Alternate gene names: 169628986

Gene position: 1896235-1897179 (Clockwise)

Preceding gene: 169628981

Following gene: 169628990

Centisome position: 37.42

GC content: 69.42

Gene sequence:

>945_bases
GTGTCGCGCCGAGGACTTCGCGCCGTGGGTATAGCCCTCGGTTACGCCCTGGATCGCTGCTTCGCCGACCCTCAGCGGTT
CCACCCGGTCGCCGGATTCGGCCAGGCGGCCGCCGCGCTGGAGGCCTACAGTTACCGCGATTCCAAGCTCGCCGGGACCG
CCCACACGGCCGCACTACTGGTCGCTGTCGCCGCCACCGGATGGGTTGCCGAACGTGCCACACACCGCTCCGCGACAGCA
ACGGTCGCCGTGACCGCCGTTGCGACCTGGGCCACGCTCGGCGGGACATCATTGATCCGGGTGGGTGCCGAGATGTCCGA
ACGTCTCTATGACGACGACATCGATGAAGCTCGGGCACTGCTGCCGTCCCTGTGCGGCCGCGACCCGAAACTGCTCGGTG
TCGGCGGCATCGCCCGGGCCACCACGGAATCTTTGGCGGAGAACACCTCCGACGCGCACACCGGGCCCTTGGTCTGGGCA
GCGCTTGCCGGAGTCCCCGGGGTCCTGGCCTATCGCGCCGCCAACACCCTCGATGCGATGATCGGTCACAAATCCGCCCG
CTATCTGCGGTTCGGCTGGGCCGCAGCGCGGTTGGACGACCTGATGAACGTGCTTCCCGCCAGGATCACCGCGCTGGCTA
CCGCGCTGACCGCGCCATTCCTCGGGGGTTCTGCGGTGGCCTCATTGCGTGTCTGCTTGCGCGACGGACGAAGTCACCCC
AGCCCGAATGCCGGCGTCGCGGAGGCAGCCTTCGCCGGAGCCCTGGGCGTGCGGCTGGGAGGCCCCCTGCGCTATCCGTA
CGGCGAAGAAGTGCGTCCGGTGCTCGGCGACGGCGCACCCCCGCGAGTCGGGGATATGCATGAGGCGGTGCGGCTTTCGC
GCGCGGTGCAGAATGTAACGGCCGTCGTGGCAGTGCTCGCCACGCTGCGTCAACGCCGCCCGTAG

Upstream 100 bases:

>100_bases
ACGGCTGCGAGCCTAGACGACCGCCTTACCCGTCCGCTCGCGTAAGCGCATGTCCCAGGTGAGTACCTCCATTGCGTAGC
GAATTCTATAGGGTTGCCGC

Downstream 100 bases:

>100_bases
CGGTCCGCGAGCCTCTCCTCGGTGGTCTGCGGTGTCCCGGGTTTGACGGCCTTGACGGCAGCGGCTGCCGCACGGCGCTG
TCTGATCTCGGAGAACACGA

Product: cobalamin biosynthesis protein CobD

Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSRRGLRAVGIALGYALDRCFADPQRFHPVAGFGQAAAALEAYSYRDSKLAGTAHTAALLVAVAATGWVAERATHRSATA
TVAVTAVATWATLGGTSLIRVGAEMSERLYDDDIDEARALLPSLCGRDPKLLGVGGIARATTESLAENTSDAHTGPLVWA
ALAGVPGVLAYRAANTLDAMIGHKSARYLRFGWAAARLDDLMNVLPARITALATALTAPFLGGSAVASLRVCLRDGRSHP
SPNAGVAEAAFAGALGVRLGGPLRYPYGEEVRPVLGDGAPPRVGDMHEAVRLSRAVQNVTAVVAVLATLRQRRP

Sequences:

>Translated_314_residues
MSRRGLRAVGIALGYALDRCFADPQRFHPVAGFGQAAAALEAYSYRDSKLAGTAHTAALLVAVAATGWVAERATHRSATA
TVAVTAVATWATLGGTSLIRVGAEMSERLYDDDIDEARALLPSLCGRDPKLLGVGGIARATTESLAENTSDAHTGPLVWA
ALAGVPGVLAYRAANTLDAMIGHKSARYLRFGWAAARLDDLMNVLPARITALATALTAPFLGGSAVASLRVCLRDGRSHP
SPNAGVAEAAFAGALGVRLGGPLRYPYGEEVRPVLGDGAPPRVGDMHEAVRLSRAVQNVTAVVAVLATLRQRRP
>Mature_313_residues
SRRGLRAVGIALGYALDRCFADPQRFHPVAGFGQAAAALEAYSYRDSKLAGTAHTAALLVAVAATGWVAERATHRSATAT
VAVTAVATWATLGGTSLIRVGAEMSERLYDDDIDEARALLPSLCGRDPKLLGVGGIARATTESLAENTSDAHTGPLVWAA
LAGVPGVLAYRAANTLDAMIGHKSARYLRFGWAAARLDDLMNVLPARITALATALTAPFLGGSAVASLRVCLRDGRSHPS
PNAGVAEAAFAGALGVRLGGPLRYPYGEEVRPVLGDGAPPRVGDMHEAVRLSRAVQNVTAVVAVLATLRQRRP

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: 6.3.1.10

Molecular weight: Translated: 32664; Mature: 32532

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRGLRAVGIALGYALDRCFADPQRFHPVAGFGQAAAALEAYSYRDSKLAGTAHTAALL
CCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHHH
VAVAATGWVAERATHRSATATVAVTAVATWATLGGTSLIRVGAEMSERLYDDDIDEARAL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
LPSLCGRDPKLLGVGGIARATTESLAENTSDAHTGPLVWAALAGVPGVLAYRAANTLDAM
HHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
IGHKSARYLRFGWAAARLDDLMNVLPARITALATALTAPFLGGSAVASLRVCLRDGRSHP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
SPNAGVAEAAFAGALGVRLGGPLRYPYGEEVRPVLGDGAPPRVGDMHEAVRLSRAVQNVT
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVAVLATLRQRRP
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SRRGLRAVGIALGYALDRCFADPQRFHPVAGFGQAAAALEAYSYRDSKLAGTAHTAALL
CCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHHH
VAVAATGWVAERATHRSATATVAVTAVATWATLGGTSLIRVGAEMSERLYDDDIDEARAL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
LPSLCGRDPKLLGVGGIARATTESLAENTSDAHTGPLVWAALAGVPGVLAYRAANTLDAM
HHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
IGHKSARYLRFGWAAARLDDLMNVLPARITALATALTAPFLGGSAVASLRVCLRDGRSHP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
SPNAGVAEAAFAGALGVRLGGPLRYPYGEEVRPVLGDGAPPRVGDMHEAVRLSRAVQNVT
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVAVLATLRQRRP
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol

Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]