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The map label for this gene is ccmF [H]

Identifier: 16767099

GI number: 16767099

Start: 4013915

End: 4015846

Strand: Reverse

Name: ccmF [H]

Synonym: STM3814

Alternate gene names: 16767099

Gene position: 4015846-4013915 (Counterclockwise)

Preceding gene: 16767100

Following gene: 16767098

Centisome position: 82.67

GC content: 68.17

Gene sequence:

>1932_bases
ATGATGCCTGAATACGGCCACGCGCTGCTGTGCCTGGCGCTCGGCGTGGCGCTGCTGCTGTCCGTTTACCCGCTGTGGGG
CGTGGCGCGCGGTGACGCGCGGATGATGGCGTCGGCCGGGGTGTTCGCCTGGCTGCTGTTTATCTGCGTGGCGGGCGCGT
TTTTCGTGCTGGTGCACGCCTTTGTGGTTAACGACTTCACCGTGGCCTATGTCGCCGGCAACTCGAACACGCAGCTGCCG
GTGTGGTACCGGGTGGCCGCCACCTGGGGGGCGCACGAGGGCTCGCTGCTGCTGTGGGTGCTGCTGATGAGCGGCTGGAC
CCTGGCGGTGGCGGTGTTCAGCCGGCAGGTGCCGGCGGATATCGTCGCCCGGGTGCTGGCGGTGATGGGGATGGTCTGCG
CCGGTTTTCTGGCGTTCATCCTGTTCACCTCCGGCCCGTTCGCCCGCACGCTGCCGGCCTTTCCGGTGGAGGGGCGCGAC
CTGAACCCGCTGCTGCAGGACCCGGGGCTGATTTTCCACCCGCCGCTGCTGTACATGGGCTATGTCGGCTTCTCGGTGGC
CTTCGCCTTCGCCATCGCCGCGCTGCTGAGCGGGCGTCTGGACAGCGCGTTCACCCGTTTTGCCCGCCCGTGGACGCTGG
CGGCGTGGGTGTTCCTGACGCTGGGCATCGTGCTCGGCTCGGCGTGGGCCTACTACGAGCTGGGCTGGGGCGGCTGGTGG
TTCTGGGACCCGGTGGAGAACGCCTCCTTTATGCCGTGGCTGGCGGGCACCGCCCTGCTGCACTCGCTGGCGGTCACCGA
ACAGCGCGCCGGCTTTAAGGCGTGGACGCTGCTGCTGTCCATCTGCGCCTTCTCGCTGTGCCTGCTGGGCACCTTCCTGG
TGCGCTCCGGGGTGCTGGTGTCGGTGCACGCCTTCGCCTCCGACCCGGCGCGCGGGATGTTTATCCTCGCCTTTATGGTG
CTGGTCACCGGCGGCTCGCTGCTGCTGTTCGCCGTGCGCGGGCACAGGGTGCGTTCGCGGGTGAACAACGCGCTGTGGTC
GCGCGAGTCGCTGCTGCTCGGCAACAACGTCCTGCTGATGGCCGCCATGCTGGTGGTGCTGCTGGGCACCCTGCTGCCGC
TGGTGCACAAACAGCTGGGGCTGGGCAGCATTTCGGTGGGGGAGCCGTTCTTTAACACCATGTTCACCTGGCTGATGGTC
CCCTTTGCCCTGCTGCTGGGGGTGGGGCCGCTGGTGCGCTGGGGCCGGGACCGGCCGCGTAACATCAGGACGCTGCTGCT
CACCGCCCTGGTCTCCACCCTGGTGCTGTCGGTACTTTTGCCATGGCTGCTGGAAGATAAAATCATCGCCATGACGGCGG
TGGGGATGGCGATGGCCTGCTGGATTGCGGTGCTGGCGGTGGCCGAAGCCGTACAGCGCGTGTCCCGCGGCACGAAAACC
TCTCTCAGCTACTGGGGAATGGTGGCGGCGCACCTCGGGCTGGCGGTGACGATTACCGGCATCGCCTTCAGCCAGAATTA
CAGCGTGGAGCGTGACGTGCGGATGCGGGCGGGCGACAGCGTGACCATTCACGACTACCGCTTCACCTTCCGGGAGGTGC
GGGACATCACCGGGCCCAACTACCGCGGCGGGGTGGCCCTCATCGGGGTGACGCGCCACGGCGAGCCGGAGGCGGTGCTG
CACGCGGAGAAACGGCTCTACAACACCAGCCGGATGGTGATGACCGAGGCGGCGATTGACGGCGGGCTGACCCGCGACCT
GTACGCCGCGCTCGGGGAGGAGCTGGACAACGGCGCGTGGGCCGTGCGCCTGTACTACAAACCGTTTGTCCGCTGGATAT
GGGCCGGGGGACTGCTGATGGCGCTGGGCGGGCTGCTGTGCCTGGCGGACCCGCGCTACCGCCGCCGTAAACCATTGCCG
GAGGCCGGATGA

Upstream 100 bases:

>100_bases
TGCTGGCCAAACATGACGAGAACTACACCCCGCCGGAAGTGGAAAAGGCGATGCAGGAAAACCACCGCCGCCCGCAACGC
GCTGATAAGGACACCTCATC

Downstream 100 bases:

>100_bases
AACGCAACGTACTGTTATTACCGCTGCTGATTTTTCTGCTGATTGCCGCGGCGCTGCTGTGGCAGCTGGCGCGCAACGCG
CAGGGGGATGACCCGACGAA

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP
VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD
LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV
LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV
PFALLLGVGPLVRWGRDRPRNIRTLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL
HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP
EAG

Sequences:

>Translated_643_residues
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP
VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD
LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV
LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV
PFALLLGVGPLVRWGRDRPRNIRTLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL
HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP
EAG
>Mature_643_residues
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP
VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD
LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV
LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV
PFALLLGVGPLVRWGRDRPRNIRTLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL
HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP
EAG

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=646, Percent_Identity=85.2941176470588, Blast_Score=1080, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=571, Percent_Identity=40.8056042031524, Blast_Score=325, Evalue=4e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70384; Mature: 70384

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
HHHCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHH
IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCCEECCHHHHHH
YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEECCCCEE
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCHHHH
AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
NIRTLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
HHHHHHHHHHHHCHHEEEEEEEEECCCCCCCCHHHCCCCEEEEEHHHHHHHHHHHCCCCC
YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
EEEEHHHHHHHHHHHCCHHHHHCCHHEECCCCHHHCCCCCCCC
>Mature Secondary Structure
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
HHHCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHH
IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCCEECCHHHHHH
YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEECCCCEE
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCHHHH
AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
NIRTLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
HHHHHHHHHHHHCHHEEEEEEEEECCCCCCCCHHHCCCCEEEEEHHHHHHHHHHHCCCCC
YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
EEEEHHHHHHHHHHHCCHHHHHCCHHEECCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]