Click here to switch to the map view.

The map label for this gene is yibR

Identifier: 16767005

GI number: 16767005

Start: 3915683

End: 3915916

Strand: Reverse

Name: yibR

Synonym: STM3720

Alternate gene names: 16767005

Gene position: 3915916-3915683 (Counterclockwise)

Preceding gene: 16767006

Following gene: 16767004

Centisome position: 80.62

GC content: 31.2

Gene sequence:

>234_bases
ATGAGTGAGACAAGGATAGACAGAATGTCTAACATTAAAAGTTATATTTCAAACCAAAAAAACATAATTCAACATGATGA
TTTTTTTGGAAGAAGACTGGACATTGCTCTTTGCTTTGATCATGGTTTTATAATGCCAGCAGGTGTGGCAATATATTCCA
TTATCGAAAATAATAAAGATATTGACTACGCCTTAAAGCAAAAAGAGAGATGTCAGGTAAAAATTACTCTATAG

Upstream 100 bases:

>100_bases
GGGTTGATTCATCAGGCAGATGTTAAAGCCGCTCGAATTAAAGAAAGGACAATAAGAAAAAATCTGTAATTATAATAATT
ATGCACTCAGTGAGTAATTT

Downstream 100 bases:

>100_bases
GGTTATATTACTATTTTTGCTATTTAATATCTAAAGTCTTTAGATTAAGGTTTTAACTCTGGGGTATATATGAAAATAGC
TTTTATTGGCGAAGCGGTAT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MSETRIDRMSNIKSYISNQKNIIQHDDFFGRRLDIALCFDHGFIMPAGVAIYSIIENNKDIDYALKQKERCQVKITL

Sequences:

>Translated_77_residues
MSETRIDRMSNIKSYISNQKNIIQHDDFFGRRLDIALCFDHGFIMPAGVAIYSIIENNKDIDYALKQKERCQVKITL
>Mature_76_residues
SETRIDRMSNIKSYISNQKNIIQHDDFFGRRLDIALCFDHGFIMPAGVAIYSIIENNKDIDYALKQKERCQVKITL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIBR_SALTY (P40824)

Other databases:

- EMBL:   S56361
- EMBL:   AE006468
- PIR:   B47074
- RefSeq:   NP_462620.1
- GeneID:   1255244
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3720
- NMPDR:   fig|99287.1.peg.3596
- HOGENOM:   HBG674002
- OMA:   RCQVKIT
- ProtClustDB:   CLSK894825
- BioCyc:   STYP99287:STM3720-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8996; Mature: 8864

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETRIDRMSNIKSYISNQKNIIQHDDFFGRRLDIALCFDHGFIMPAGVAIYSIIENNKD
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCC
IDYALKQKERCQVKITL
CCHHHCCCCCEEEEEEC
>Mature Secondary Structure 
SETRIDRMSNIKSYISNQKNIIQHDDFFGRRLDIALCFDHGFIMPAGVAIYSIIENNKD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCC
IDYALKQKERCQVKITL
CCHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444813; 11677609