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The map label for this gene is ygbK [H]

Identifier: 16766223

GI number: 16766223

Start: 3059448

End: 3060710

Strand: Reverse

Name: ygbK [H]

Synonym: STM2917

Alternate gene names: 16766223

Gene position: 3060710-3059448 (Counterclockwise)

Preceding gene: 16766224

Following gene: 16766222

Centisome position: 63.01

GC content: 59.46

Gene sequence:

>1263_bases
ATGTTAAAAATTGGCGTCATTGCCGATGATTTTACCGGCGCGACCGACATCGCCAGTTTTCTGGTCGAAAACGGGATGCC
GACAGTGCAGATCAATGATGTCCCAACCGGGACGCAACCGGAAGGGTGCGACGCGGTGGTTATCAGCCTGAAAACCCGCT
CATGCCCGGCGCAAGAGGCGATAAAACAATCGCTGGCGGCGCTGGTATGGCTGAAAAAACAGGGCTGCCAGCAAGTCTAT
TTCAAATATTGCTCGACTTTCGATAGTACCGCCGAAGGCAATATCGGCCCGGTCACCGATGCGCTGATGGTGGCGCTGGA
TACCTCATTTACCGTGATTTCTCCCGCGCTGCCGGTTAACGGACGCACGGTTTATCAGGGCTATCTGTTTGTCATGAACC
ACTTGCTGGCGGAGTCCGGTATGCGCCACCACCCAATCAATCCGATGACCGACAGCTACCTGCCGCGTCTGATGGAAGCG
CAGGCGCAAGGGCGCTGCGGCGTTATTCCAGCTCAGACGCTTGATGAAGGCGTTGCCGCGACCCGTGCGGCGCTGTCGCG
TTTACAGCAGGAAGGATATCGCTACGCAGTACTTGACGCGCTCAATGAGCGGCACCTGGAAATCCAGGGCGAGGTTTTGC
GTGATGCTCCGCTGGTGACCGGCGGTTCCGGGCTGGCAATGGGGCTGGCGCGTCAGTGGGCGAAGCACGGCGTTTCTCAG
GCCCGTTCCGCAGGCTATCCGCTGAGCGGCCGCGCGGTGGTGCTTTCCGGTTCCTGTTCGCAAATGACGAATCAGCAGGT
GGCTTTCTATCGACAACATGCTCCCACACGCGACGTTGATGTGGCGCGCTGCCTGTCATCCGAGACGCGCGAGGCCTACG
CTGAAGCGCTGGCGCAGTGGGTGCTCAGTCAGGACAGCGAACTGGCGCCAATGATTAGCGCCACCGCCTCCACGCAGGCG
CTGGCCGCCATCCAGCAGCAATATGGCGCTACCGAAGCCAGCCATGCGGTAGAGGCGCTCTTTTCCCTGCTGGCTGCTCG
CTTAGCGGAAGGCGGTATCACCCGGTTTATTGTGGCGGGCGGCGAAACCTCGGGCGTGGTGACGCAAAGCCTCGGTATTA
CCGGTTTTCACATCGGACCGTGCATTTCACCCGGCGTGCCGTGGGTCAACGCGCTCCATGCGCCAGTCTCGCTGGCGCTA
AAGTCAGGTAATTTTGGCGATGAATCCTTTTTCATCCGCGCTCAAAGGGAGTTTCAGGTATGA

Upstream 100 bases:

>100_bases
CCAGCGCCAGTAACGCCGGTTATGGCAAAGAGGATGACAGCGCTGTGATCAAAATTTTCTCGGGGATTACTCTGCCTGGC
GTCACGCCTGAGGAGCCGTC

Downstream 100 bases:

>100_bases
CGATACTGGCAAAAGAAGAGCACGCTTTGCGAGAAGAGATGGTCAGGATAGCCGCCTCGTTTTTCCAGCGCGGCTATGCC
ACCGGCTCGGCAGGCAACCT

Product: tRNA synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCDAVVISLKTRSCPAQEAIKQSLAALVWLKKQGCQQVY
FKYCSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVNGRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEA
QAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQ
ARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSETREAYAEALAQWVLSQDSELAPMISATASTQA
LAAIQQQYGATEASHAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLAL
KSGNFGDESFFIRAQREFQV

Sequences:

>Translated_420_residues
MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCDAVVISLKTRSCPAQEAIKQSLAALVWLKKQGCQQVY
FKYCSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVNGRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEA
QAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQ
ARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSETREAYAEALAQWVLSQDSELAPMISATASTQA
LAAIQQQYGATEASHAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLAL
KSGNFGDESFFIRAQREFQV
>Mature_420_residues
MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCDAVVISLKTRSCPAQEAIKQSLAALVWLKKQGCQQVY
FKYCSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVNGRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEA
QAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQ
ARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSETREAYAEALAQWVLSQDSELAPMISATASTQA
LAAIQQQYGATEASHAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLAL
KSGNFGDESFFIRAQREFQV

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1011 [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=384, Percent_Identity=79.4270833333333, Blast_Score=625, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44791; Mature: 44791

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCDAVVISLKTRSCPAQEA
CEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHH
IKQSLAALVWLKKQGCQQVYFKYCSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCC
GRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEAQAQGRCGVIPAQTLDEGVAA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQ
HHHHHHHHHHCCCEEEEHHHHCCCCEEEECHHHHCCCCEECCCHHHHHHHHHHHHHHHHH
ARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSETREAYAEALAQW
HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLSQDSELAPMISATASTQALAAIQQQYGATEASHAVEALFSLLAARLAEGGITRFIVAG
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
GETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLALKSGNFGDESFFIRAQREFQV
CCCCCEEECCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCDAVVISLKTRSCPAQEA
CEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHH
IKQSLAALVWLKKQGCQQVYFKYCSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCC
GRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEAQAQGRCGVIPAQTLDEGVAA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQ
HHHHHHHHHHCCCEEEEHHHHCCCCEEEECHHHHCCCCEECCCHHHHHHHHHHHHHHHHH
ARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSETREAYAEALAQW
HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLSQDSELAPMISATASTQALAAIQQQYGATEASHAVEALFSLLAARLAEGGITRFIVAG
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
GETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLALKSGNFGDESFFIRAQREFQV
CCCCCEEECCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]