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The map label for this gene is ybhC [H]

Identifier: 16764150

GI number: 16764150

Start: 850320

End: 851603

Strand: Reverse

Name: ybhC [H]

Synonym: STM0786

Alternate gene names: 16764150

Gene position: 851603-850320 (Counterclockwise)

Preceding gene: 16764155

Following gene: 16764148

Centisome position: 17.53

GC content: 57.24

Gene sequence:

>1284_bases
GTGAATACATTATCGGTTTCCCGTCTGGCGCTGGCACTGGCTTTTGGCGTGACGCTGAGCGCCTGTAGCTCTACGCCACC
CGATCAGATCCCTTCCGATCAAACCGCGCCTGGCACCGCCTCGCGCCCAATTCTGTCGGCAAATGAAGCGAAAAACTTCG
TTGCGGCGCGCTATTTTGCCTCCCTGACGCCGAATACCGCCCCGTGGTCGCCGTCGCCGATTACCCTGCCCGCACAGCCT
GACTTTGTGGTGGGGCCGGCAGGTACGCCAGGCGTTACGCACACCTCGATTCAGGCCGCGGTCGATGCGGCAATGGTTAA
ACGCACGAACAAACGCCAGTACATTGCTATTATGCCGGGCGACTATCAGGGGACCGTGTATGTTCCCGCCGCGCCGGGAA
GTCTGACCCTGTACGGGACCGGTGAAAAACCGATCGATGTGAAAATTGGGATGGCGATTGATGGTGAAATGAGTGTCGCT
GACTGGCGCCGCGCGGTGAATCCCGGCGGGAAATATATGCCTGGTAAACCCGCCTGGTATATGTTCGATAACTGCCAAAG
CAAACACGCCGCGACGATCGGTGTAATGTGTTCTGCCGCGTTCTGGTCGCAGAATAACGGTCTGCAGCTACAAAATCTGA
CCATCGAGAACACGCTGGGCGACAGCGTCGATGCCGGAAACCATCCGGCGGTGGCGCTGCGTACCGATGGCGACAAAGTC
CAGATTAACAAGGTCAATATCCTTGGCCGCCAGAACACCTTCTTTGTGACCAACAGCGGCGTGCAGAACCGTCTGCAAAC
CGATCGCCAGCCACGTACGCTGGTGACGAACAGCTATATTGAAGGCGATGTGGATATGGTTTCCGGACGCGGCGCCGTGG
TGTTCGATAACACCAACTTCCAGGTCGTCAACTCCCGCACACAGCAGGAAGCCTACGTCTTCGCCCCGGCGACGCTGTCC
AATATTTACTATGGCTTTTTGGCGATCAACAGCCGCTTTAACGCCTCCGGCGATGGCGTTGCGCAGCTTGGCCGCTCGCT
GGATGTCGACGCCAACACCAACGGTCAGGTCGTGATCCGCGACAGCGTGATTAACGAGGGCTTCAACGTTGCCAAACCGT
GGGCCGACGCGGTCATCTCGAAACGTCCGTTTGCTGGAAATACGGGAACCGTGGATGACAAAGACGAGGTGCAGCGTAAT
CTGAACGACACTAACTACAACCGCATGTGGGAATACAACAACCGCGGTATAGGCAGTAAAGTAGTGGCGGAACCTAAGCA
GTAA

Upstream 100 bases:

>100_bases
AGGAACTTTTTACCTTTTCGCCTTCCCGTTTCGTTCAACTTAGTATAAAAAAGCAGGCTTCAATGGATGTCATTTAACTT
TTTCAAGCCCGGAGCAACCT

Downstream 100 bases:

>100_bases
TCACCGTTCCGGTTCAGGCTTATAAACGGGCCGCCGCAGCAGATGTGGCGGCCCGTGGTTTTACTGCAAGCAATGTTTAT
TGAAATTAATCAGGCATCCC

Product: pectinesterase

Products: methanol; pectate

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQP
DFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLS
NIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRN
LNDTNYNRMWEYNNRGIGSKVVAEPKQ

Sequences:

>Translated_427_residues
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQP
DFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLS
NIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRN
LNDTNYNRMWEYNNRGIGSKVVAEPKQ
>Mature_427_residues
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQP
DFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLS
NIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRN
LNDTNYNRMWEYNNRGIGSKVVAEPKQ

Specific function: Putative thioesterase. Does not bind pectin, and has no pectinesterase activity [H]

COG id: COG4677

COG function: function code G; Pectin methylesterase

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pectinesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786989, Length=427, Percent_Identity=87.1194379391101, Blast_Score=778, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR018040
- InterPro:   IPR000070 [H]

Pfam domain/function: PF01095 Pectinesterase [H]

EC number: 3.1.1.11

Molecular weight: Translated: 45908; Mature: 45908

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHEEHHH
SLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPG
HCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
DYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVADWRRAVNPGGKYMPGKPAWY
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEE
MFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
EECCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEE
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCCCEEEECCEECCCEEEECCCCEEEEECCCE
QVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIR
EEEECCCCCCEEEECCHHHHHEEEEEEEEECCCCCCCCHHHHHCCEEECCCCCCCCEEEE
DSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRNLNDTNYNRMWEYNNRGIGSK
ECHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCC
VVAEPKQ
CCCCCCC
>Mature Secondary Structure
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHEEHHH
SLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPG
HCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
DYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVADWRRAVNPGGKYMPGKPAWY
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEE
MFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
EECCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEE
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCCCEEEECCEECCCEEEECCCCEEEEECCCE
QVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIR
EEEECCCCCCEEEECCHHHHHEEEEEEEEECCCCCCCCHHHHHCCEEECCCCCCCCEEEE
DSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRNLNDTNYNRMWEYNNRGIGSK
ECHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCC
VVAEPKQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: pectin; H2O

Specific reaction: pectin + n H2O = n methanol + pectate

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 8905232; 331474; 7567469; 10806384 [H]