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The map label for this gene is qseD [H]

Identifier: 16764129

GI number: 16764129

Start: 827344

End: 828327

Strand: Reverse

Name: qseD [H]

Synonym: STM0764

Alternate gene names: 16764129

Gene position: 828327-827344 (Counterclockwise)

Preceding gene: 16764136

Following gene: 16764127

Centisome position: 17.05

GC content: 39.53

Gene sequence:

>984_bases
GTGTATAATGCTACTTATATAAATGAAACTCATCCAATGCTAATAAGGTTGCAGCTTATGCAATATCGGCATCACCTCGA
ACTAACATGGCTCGAAGACTGTCTGGCTCTAAAAGAAACGTTGAATTTCTCAAAAGCGTCTGCCTCAAGATATGTGACTC
AACCCGCATTTAGTCGTCGGATACAATCTCTCGAAGAATGGGTGGGTACGCCCCTTTTTGAAAGAAGTAAACGGGGAGTC
ACCCTTACCAAGGCCGGAGAAGTATTTACAGACCAGCTTCCCGAACTGATCCACTCCTTGTACACATTGAAAAGTGATAC
CCTTGAGGCCGCAGGTAATAAACAACCCAGTCTTGTTTTTTCAGCAACGCATGCTTTGTCTTTCTCTTTTGTACCGCATT
TGTTAAAACAGAGTGATAAAATTGCAAAATTTGGTTCATTTCGTCTTTTATCTGACTCATTGAATGCGTGCGAAAAAATG
ATGCGGCAGGGAGATTCACAATTTTTGCTGTGTCACCATCACCCACATATGCATCTAAATTTAAATAAAAATAACTTTAT
GAGCATTCGTCTTGGGTTTGATACATTAATTCCATTCAGTAAACCAGACTCAGAAACGTTAAAACCGTTGTGGAATATAA
ATAATAAGATTCAATTCCCTTACCTTTCTTTTTCATCACAATCAGGTCTGGGAAGAATAATAGCAAATACAGCGTCTATT
AACAGAATTACCCATAATATAAATGTTGCCTTTGTGGCCGATCTGGCAGCAACACTATTGGCAATGGTCAGATCTGGCGA
TGGTGTTGCCTGGATACCTCAAAGCCTTGCCAGGCAAGATATAGAGGCTAAAACTATTGTTACTGCAGCGGAAAAAGAAA
GTAATTTATGGGTACCCATAGAAATAAGACTTTATAGACCAGCCAAGAGAATGCCTCCAGATGCCGAAGAGCTATGGGAA
ATTTTTGTTGAAGAACAAATATAA

Upstream 100 bases:

>100_bases
TACACTCACATAAATAACAACACTTACCCGACAAAGGCATAACATATTCTTACTGCTTTTGTTTCTGTTTAATCAAATAA
TTTCCTCTTAAAATCTGTCT

Downstream 100 bases:

>100_bases
TTATTTAATTGTAAAATGTTCTTTAATATAATCCTCAATGAATTTAATTAACGCTCTGGTTGCATATGATAAATATTTAT
CTTTCTTCCAGGCCAAACCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGV
TLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSLVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKM
MRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASI
NRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWE
IFVEEQI

Sequences:

>Translated_327_residues
MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGV
TLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSLVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKM
MRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASI
NRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWE
IFVEEQI
>Mature_327_residues
MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGV
TLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSLVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKM
MRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASI
NRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWE
IFVEEQI

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=304, Percent_Identity=29.6052631578947, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI145693105, Length=175, Percent_Identity=26.2857142857143, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37269; Mature: 37269

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRR
CCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH
IQSLEEWVGTPLFERSKRGVTLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSLVF
HHHHHHHHCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEE
SATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKMMRQGDSQFLLCHHHPHMHLN
EHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEE
LNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASI
ECCCCEEEEEECHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCHHH
NRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPI
HHHEECCCEEHHHHHHHHHHHHHHCCCCCEECCHHHHHCCCCHHHEEEEECCCCCCEEEE
EIRLYRPAKRMPPDAEELWEIFVEEQI
EEEEECCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRR
CCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH
IQSLEEWVGTPLFERSKRGVTLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSLVF
HHHHHHHHCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEE
SATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKMMRQGDSQFLLCHHHPHMHLN
EHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEE
LNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASI
ECCCCEEEEEECHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCHHH
NRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPI
HHHEECCCEEHHHHHHHHHHHHHHCCCCCEECCHHHHHCCCCHHHEEEEECCCCCCEEEE
EIRLYRPAKRMPPDAEELWEIFVEEQI
EEEEECCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]