Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
---|---|
Accession | NC_003197 |
Length | 4,857,432 |
Click here to switch to the map view.
The map label for this gene is mrdB [H]
Identifier: 16764016
GI number: 16764016
Start: 700908
End: 702020
Strand: Reverse
Name: mrdB [H]
Synonym: STM0639
Alternate gene names: 16764016
Gene position: 702020-700908 (Counterclockwise)
Preceding gene: 16764017
Following gene: 16764015
Centisome position: 14.45
GC content: 53.01
Gene sequence:
>1113_bases ATGACGGATAATCCGAACAAAAAAACCTTCTGGGATAAAATTCATATCGATCCCACGATGCTACTCATTCTGCTGGCGTT ACTGGTTTATAGCGCGTTGGTCATCTGGAGCGCCAGCGGCCAGGACATCGGCATGATGGAGCGTAAAATCGGTCAGATTG CGATGGGGCTGGTGGTCATGGTGGTGATGGCGCAGATCCCGCCGCGCGTGTATGAAGGCTGGGCGCCCTATCTCTATATC ATTTGTATCATTTTGCTGGTCGCCGTTGATGCCTTCGGCGCAATATCCAAAGGCGCGCAGCGCTGGCTCGATCTGGGAAT CGTTCGCTTTCAGCCTTCGGAAATAGCCAAAATCGCCGTGCCGCTGATGGTCGCCCGCTTTATTAACCGCGACGTCTGCC CGCCCTCGCTGAAAAATACCGCCATCGCCCTGGTATTAATCTTTATGCCTACCCTGCTGGTCGCCGCCCAGCCGGACCTG GGGACGTCTATTCTGGTCGCCCTTTCCGGTCTCTTTGTCCTATTTTTGTCTGGTCTGAGCTGGCGCTTAATTGGGGTCGC CATTGTATTGATCGCTGCATTTATTCCTATTTTGTGGTTTTTCCTGATGCACGATTACCAACGCCAGCGCGTCATGATGC TCCTTGATCCGGAGACCGATCCGCTGGGCGCGGGCTATCATATTATTCAGTCTAAAATCGCCATTGGCTCAGGCGGCCTG CGCGGTAAAGGCTGGCTCCACGGCACCCAGTCGCAGCTGGAGTTTTTACCCGAACGCCATACCGACTTTATCTTCGCGGT ACTGGCGGAAGAGCTCGGTCTGGTGGGCATCCTGATTCTGCTCGCGCTCTATATTTTGCTAATAATGCGCGGCTTGTGGA TTGCCGCCAGAGCGCAAACTACATTTGGTCGCGTGATGGCTGGCGGATTAATGTTAATATTATTCGTTTATGTCTTCGTA AATATTGGTATGGTGAGCGGTATTCTGCCTGTGGTTGGAGTACCTTTACCCCTGGTCAGCTACGGGGGCTCCGCACTGAT TGTGCTGATGGCCGGGTTCGGGATTGTGATGTCGATCCACACCCACAGAAAAATGTTGTCGAAAAGCGTATAA
Upstream 100 bases:
>100_bases CGATCATGCGCCAAATCCTTGATCACATCATGCTGGGCGACAACAACACCCATTTGCCTGCGGAAAACCCGGTGGTTGCA GCGGCGGAGGACCAATAATC
Downstream 100 bases:
>100_bases GGGGTGCGCAATGCGTAAGCAGTTGCCTGTAATCTGCGTCGCGGCAGGGATAGTACTACTCGCGGCATGTACTAATGACG GCGGTCAGCAGCAAACCACC
Product: cell wall shape-determining protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MTDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLYI ICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDL GTSILVALSGLFVLFLSGLSWRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGL RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFV NIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
Sequences:
>Translated_370_residues MTDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLYI ICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDL GTSILVALSGLFVLFLSGLSWRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGL RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFV NIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV >Mature_369_residues TDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLYII CIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLG TSILVALSGLFVLFLSGLSWRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGLR GKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVN IGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
Specific function: This is one of the proteins responsible for the rod shape of E.coli. Is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]
COG id: COG0772
COG function: function code D; Bacterial cell division membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ftsW/rodA/spoVE family [H]
Homologues:
Organism=Escherichia coli, GI1786853, Length=370, Percent_Identity=98.1081081081081, Blast_Score=724, Evalue=0.0, Organism=Escherichia coli, GI1786277, Length=366, Percent_Identity=30.8743169398907, Blast_Score=167, Evalue=1e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001182 - InterPro: IPR018365 - InterPro: IPR011923 [H]
Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]
EC number: NA
Molecular weight: Translated: 40533; Mature: 40402
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS00428 FTSW_RODA_SPOVE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVVM CCCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAV HHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHH PLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLS HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH WRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCC RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQT CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHH THRKMLSKSV HHHHHHHCCC >Mature Secondary Structure TDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVVM CCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAV HHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHH PLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLS HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH WRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCC RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQT CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHH THRKMLSKSV HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]