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The map label for this gene is rlpA

Identifier: 16764015

GI number: 16764015

Start: 699752

End: 700897

Strand: Reverse

Name: rlpA

Synonym: STM0638

Alternate gene names: 16764015

Gene position: 700897-699752 (Counterclockwise)

Preceding gene: 16764016

Following gene: 16764014

Centisome position: 14.43

GC content: 60.56

Gene sequence:

>1146_bases
ATGCGTAAGCAGTTGCCTGTAATCTGCGTCGCGGCAGGGATAGTACTACTCGCGGCATGTACTAATGACGGCGGTCAGCA
GCAAACCACCGTCGCGCCGCAACCTGCGGTATGTAATGGTCCGACTGTGGAAATCAGCGGAGCGGAACCGCGTTATGAAC
CTCTGAATCCGACCGCAAACCAGGATTATCAGCGTGACGGTAAAAGTTATAAAATCGTTCAGGACCCGTCCCGCTTTAGC
CAGGCTGGCCTGGCCGCTATTTATGATGCGGAACCCGGCAGTAATTTAACCGCCTCCGGGGAGATGTTCGATCCGATGCA
GCTTACCGCCGCCCATCCGACACTGCCTATCCCCAGCTATGCGCGAATCACCAACCTGGCCAACGGTCGCATGATCGTCG
TGCGTATTAACGATCGCGGCCCCTATGGCACCGATCGGGTCATCTCCCTGTCCCGCGCAGCGGCGGATCGTCTGAATACC
TCGAATAATACTAAAGTACGGATTGACCCCATTATCGTGGCGCCGGATGGTTCGCTCTCCGGCCCGGGGATGGCCTGTAC
GACGGTGGCGAAACAGACCTACGCTCTGCCCCCGCGCCCTGATTTAAGCGGCGGAATGGGAAGCGCCTCTTCAGCACCTG
CACAACCGCAAGGCGACGTTCTTCCGGTCAGTAATTCCACGTTGAAAAGTGACGATACCACCGGTGCGCCGGTGAGCAGC
AGCGGCTTCCTCGGCGCGCCGACTACGCTGGCGCCTGGCGTGCTGGAGAGTAATGAACCGACGCCGGCGCCACAGCCAGC
GCCGGTTTCCGCGCCGGTGGCGGCTCCAGCGACGGCTCCAGCGACTGCGACGCCGGTAAGCGCGCCTGCTGCCGCGGCCC
CGGTATCTGCCCCGGTGAGTGCGCCAGCCGCCGCGGCGAGCGGTCGTTTCGTCGTCCAGGTCGGCGCCGTCAGCGATCAA
ACGCGTGCGCAGCAATACCAACAGCGTTTAAGCCAGCAGTTCAGCGTACCAGGACGCGTAATACAAAACGGCGCGGTCTG
GCGTATTCAACTGGGGCCTTTTGCCAGTAAAGCCGAAGCCAGCGCGTTACAGCAACGTTTGCAAACAGAAGCACAATTAC
AGTCCTTTATCGCCAGCGCGCAGTAA

Upstream 100 bases:

>100_bases
GGGGGCTCCGCACTGATTGTGCTGATGGCCGGGTTCGGGATTGTGATGTCGATCCACACCCACAGAAAAATGTTGTCGAA
AAGCGTATAAGGGGTGCGCA

Downstream 100 bases:

>100_bases
CCGATCGCAGGTATCTGTACTGTCAATTTCTGTAAATGACATTAACAAAGTCACGCGGAAAGTCAGATGCCTGCCAGTTA
TGCTTTTGCTATAGTAGGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAPATAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQ
TRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ

Sequences:

>Translated_381_residues
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAPATAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQ
TRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ
>Mature_381_residues
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAPATAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQ
TRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

Organism=Escherichia coli, GI1786852, Length=381, Percent_Identity=80.3149606299213, Blast_Score=566, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_SALTY (Q8ZR01)

Other databases:

- EMBL:   AE006468
- RefSeq:   NP_459630.1
- ProteinModelPortal:   Q8ZR01
- SMR:   Q8ZR01
- PRIDE:   Q8ZR01
- GeneID:   1252158
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0638
- NMPDR:   fig|99287.1.peg.618
- HOGENOM:   HBG701137
- OMA:   TANQDYE
- ProtClustDB:   PRK10672
- BioCyc:   STYP99287:STM0638-MONOMER
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730
- Gene3D:   G3DSA:3.30.70.1070
- TIGRFAMs:   TIGR00413

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR; SSF50685 Barwin_like; SSF110997 Spore_cell-division_bac

EC number: NA

Molecular weight: Translated: 39108; Mature: 39108

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTAN
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
QDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSY
CCHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCH
ARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNTSNNTKVRIDPIIVAPDGSLS
HHHHHCCCCCEEEEEECCCCCCCCCHHEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
GPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAPATAPATATPVSAPAAAAPVSAPVS
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAAAASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEA
CCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCHHHH
SALQQRLQTEAQLQSFIASAQ
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTAN
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
QDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSY
CCHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCH
ARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNTSNNTKVRIDPIIVAPDGSLS
HHHHHCCCCCEEEEEECCCCCCCCCHHEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
GPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAPATAPATATPVSAPAAAAPVSAPVS
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAAAASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEA
CCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCHHHH
SALQQRLQTEAQLQSFIASAQ
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609