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The map label for this gene is ybdD [H]

Identifier: 16763978

GI number: 16763978

Start: 663443

End: 663640

Strand: Direct

Name: ybdD [H]

Synonym: STM0601

Alternate gene names: 16763978

Gene position: 663443-663640 (Clockwise)

Preceding gene: 16763977

Following gene: 16763980

Centisome position: 13.66

GC content: 52.53

Gene sequence:

>198_bases
ATGTTCGATACGCTTTCGAAAGCCGGAAAATATCTGGGACAGGCCGCAAAAATGATGATTGGCGTGCCAGACTACGACAA
CTATGTTGAGCATATGCGCATAACGCATCCGGATCAGACGCCGATGACCTATGAAGAATTTTTCCGCGAGCGGCAGGATG
CGCGCTATGGTGGAAAAGGCGGCGCGCGTTGCTGCTGA

Upstream 100 bases:

>100_bases
GGATGAGATCGTGACGCAGGCGAAAGGCGCGCACTAATCTTTTTACATCAATAGCCCTCTCCAGAATAAGGAGAGGGCAT
TTGAATGACAGGTGACAACG

Downstream 100 bases:

>100_bases
GGGTTGCCAGGCCTGATAAACGCAACGTCACCAGGCTATATTCTGAAAAATTCAACTTTTTCAAACGCCGCACGCAGGGT
GTCTGGCGTTAACGTCACCG

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGARCC

Sequences:

>Translated_65_residues
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGARCC
>Mature_65_residues
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGARCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=90.7692307692308, Blast_Score=132, Evalue=3e-33,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=73.134328358209, Blast_Score=105, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7485; Mature: 7485

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
GARCC
CCCCC
>Mature Secondary Structure
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
GARCC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]