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The map label for this gene is ybdF [H]

Identifier: 16763956

GI number: 16763956

Start: 637778

End: 638146

Strand: Reverse

Name: ybdF [H]

Synonym: STM0579

Alternate gene names: 16763956

Gene position: 638146-637778 (Counterclockwise)

Preceding gene: 16763957

Following gene: 16763955

Centisome position: 13.14

GC content: 50.95

Gene sequence:

>369_bases
ATGGACGGTCAAACACTGCACGCCTGGGCAAAACGCTTTGCGCTGGAACTGCCTTTTACCGAACACTGCTGGCCTTTCGG
CCCACAGTACGATGTGTTTAAAGTCGGCGGCAAAATATTCATGCTGTTCACTGAACATCACTGTCGCCCAGTGGTGAACC
TGAAGTCGGATCCCCAAAAGTCCCTGGTAAATCAACAAATTTACCCCAGCATTGCGCCTGGCTATCACATGAATAAGAAA
CACTGGATTTCAGTCTATGCGGGCGAGGATATCACCGTCTCGCTACTCAACGATTTGATAAATGACTCATGGAATCTGGT
CGTAGACGGGCTGCCTAAAAGAGAGCAACTGCGCCTGCGGCCGCGCTGA

Upstream 100 bases:

>100_bases
CAACAATGGATTTCGCCGCGCGCGATCCCGCTCGCGCTGGCGAATATATTGCGCTGGGATTCGAAGCCATGTGGCGCGCG
CTGACTCGCGAGGAGCAATA

Downstream 100 bases:

>100_bases
TGCAATAACCGTTTCCGCATTTTCCTCCCTTATCTTTTTACCGATAACCCGGTACCCTGCTGATACAAAAGGGTACTAAA
CCAACCAGGAGCATTTATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFTEHHCRPVVNLKSDPQKSLVNQQIYPSIAPGYHMNKK
HWISVYAGEDITVSLLNDLINDSWNLVVDGLPKREQLRLRPR

Sequences:

>Translated_122_residues
MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFTEHHCRPVVNLKSDPQKSLVNQQIYPSIAPGYHMNKK
HWISVYAGEDITVSLLNDLINDSWNLVVDGLPKREQLRLRPR
>Mature_122_residues
MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFTEHHCRPVVNLKSDPQKSLVNQQIYPSIAPGYHMNKK
HWISVYAGEDITVSLLNDLINDSWNLVVDGLPKREQLRLRPR

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=121, Percent_Identity=75.2066115702479, Blast_Score=196, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 14187; Mature: 14187

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFTEHHCRPVVNLKSDPQK
CCCCHHHHHHHHHEEECCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEECCCCCCHH
SLVNQQIYPSIAPGYHMNKKHWISVYAGEDITVSLLNDLINDSWNLVVDGLPKREQLRLR
HHHCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCEECC
PR
CC
>Mature Secondary Structure
MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFTEHHCRPVVNLKSDPQK
CCCCHHHHHHHHHEEECCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEECCCCCCHH
SLVNQQIYPSIAPGYHMNKKHWISVYAGEDITVSLLNDLINDSWNLVVDGLPKREQLRLR
HHHCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCEECC
PR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]