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The map label for this gene is fimF

Identifier: 16763928

GI number: 16763928

Start: 609692

End: 610210

Strand: Direct

Name: fimF

Synonym: STM0548

Alternate gene names: 16763928

Gene position: 609692-610210 (Clockwise)

Preceding gene: 16763927

Following gene: 16763941

Centisome position: 12.55

GC content: 55.11

Gene sequence:

>519_bases
ATGATCCTTCGGCGCGTTTTCATCGCTATCGGTTGTGTTTTGTTCAGCCCGCTGAGTCAGGCCAACTCATCTCTGGGCGA
AGTGAATATTGAACTGCGCGGTAACGTGGTGGATTTTACCTGCGCCGTGGTGGCGGGCGACAGTAACAAGTCGGTTAACC
TCGGCACCTGGCCGACAAAACAGCTTCACGCCGCCGGTGACGCTACGCAACCGGTAGCCTTTAGCCTAAAACTTGAAGGT
TGCCCGCCGGGGTCGGCGTCTATAACGTTTTCCGGGACGCCAGCGCCCGGCACGGCATTACTGGCGCTTGCTGATACGGC
AATGGCGCAAAAACTGGCGATTGAAATTCGCGATGGCGATCAACGTCGATTGCCACTTGAACAGGCCAGCAAGGCCGTCG
ATATTGACAACAACGGCAATGCTACCCTGAAATTCTATGCGAACTATATCGCCTTAGCCGATGGCGTGCAGCCCGGACTT
GCTAACGCGGATGCGACCTTCCTGATCAATTACAATTAG

Upstream 100 bases:

>100_bases
TATTCGCGCCTGGCCAATCAGCGTGACGGGGATTAAACCGGCGGAAGGGCCGTTTACTGCGCGCGGCTATCTACGAGTCG
ATTATGATTAAGGAGGCATA

Downstream 100 bases:

>100_bases
TGTCCGTTATTGTGGCTCCCGAACGATAATTCGCCGGGAGTACATTTACAATAATTCGTGTGATTTGGCGTAATCGATAA
GCTCAACGATAGAGTGAAGG

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTKQLHAAGDATQPVAFSLKLEG
CPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
ANADATFLINYN

Sequences:

>Translated_172_residues
MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTKQLHAAGDATQPVAFSLKLEG
CPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
ANADATFLINYN
>Mature_172_residues
MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTKQLHAAGDATQPVAFSLKLEG
CPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
ANADATFLINYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family

Homologues:

Organism=Escherichia coli, GI1786746, Length=171, Percent_Identity=57.3099415204678, Blast_Score=192, Evalue=1e-50,
Organism=Escherichia coli, GI87082421, Length=158, Percent_Identity=25.3164556962025, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FIMF_SALTY (P37926)

Other databases:

- EMBL:   L19338
- EMBL:   AE006468
- RefSeq:   NP_459543.1
- ProteinModelPortal:   P37926
- SMR:   P37926
- GeneID:   1252068
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0548
- NMPDR:   fig|99287.1.peg.533
- HOGENOM:   HBG701898
- OMA:   DATFMIN
- ProtClustDB:   PRK09934
- BioCyc:   STYP99287:STM0548-MONOMER
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 17993; Mature: 17993

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTK
CHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCCCCH
QLHAAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGD
HEECCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEHHHHHEEEEEEEEECCC
QRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGLANADATFLINYN
CCCCCHHHCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTK
CHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCCCCH
QLHAAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGD
HEECCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEHHHHHEEEEEEEEECCC
QRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGLANADATFLINYN
CCCCCHHHCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609