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The map label for this gene is fimD

Identifier: 16763926

GI number: 16763926

Start: 606048

End: 608660

Strand: Direct

Name: fimD

Synonym: STM0546

Alternate gene names: 16763926

Gene position: 606048-608660 (Clockwise)

Preceding gene: 16763925

Following gene: 16763927

Centisome position: 12.48

GC content: 55.68

Gene sequence:

>2613_bases
ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAGCAGCGTGGCGCTGTCGGTGCTGGC
GGCGCTGTGTCCGCTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCCGTGGCGG
ATTTATCTCGCTTTGAAAAAGGTAATCATCAGCCTCCCGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA
GCGACGCAGGATATTCGTTTTGAGGCGGGCGCCGTGGGCACCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC
GGAGTGGATTAAACGGCTGGGCGTGAATACCGCGGCGTTCCCTGTCTCAGATAAAGGCGTCGATACCACGTGTATTCACC
TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAACATTAGCTTGCCGCAGGCGTCA
TTGCTCAACAGCGCGCGTGGCTATATCCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATTAATTACAGTTT
TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGCTGAGTGGCTTGAACTATGGCCCCTGGCGGTTGC
GTAATAACGGAGCCTGGAACTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG
CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATGGGGGACAGCAATACCGGGAACGATGTTTTCGACAGCGTCGGCTT
TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTTAGAGGAATCG
CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAGCTATGTGTCGCCGGGCGCGTTTGCG
ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA
CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGCAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA
GCGGCAATAGTCAGCAGTCTTCGCCATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC
GGCGGTACGCAACTTGCCGATCGTTACCGTGCCGTGGTGGTCGGGGCGGGGCGAAATTTGGGCGACTGGGGAGCCGTGTC
GGTTGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA
AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACGCGCGGATTTTACACCCTGGATGAT
GTGGCATATCGCAGTATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG
CTACCACAATCTCCGCTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAATCTGGGGGATTACGGGTCACTGT
ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG
CAAGGCATAAGTTATTCGCTGTCATGGTCGTGGAGCGAGTCGGTGGGGAGCTCAGGCGCCGACCGCATTCTGGCATTCAA
TATGTCCGTTCCGTTTAGCGTTCTGACCGGACGGCGTTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA
ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGACCGGCGTGGGCGGCACACTTCTGGAAGGACGTAATCTGAGC
TACAGCGTGACGCAAGGGCGTAGCAGTAGCAATGGTTATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC
GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTCGGTCATGCGG
ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA
AACCAGACCGGCGTGAAAACGGACTGGCGGGGCTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC
GTTAGATACCAACACGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTAGTGCCGACAGAGGGCGCGCTGG
TGCGGGCCGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC
GCGATAGTACGAGAAACCGCCAGCGGCATTACCAGTATGGTCGGCGATGATGGGCAAATTTATCTGAGCGGCTTGCCGCT
AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGGATAGCC
TGAAGCAGGCGATTACGATAGCCAGCGCAACCTGTATCCGTCCGGCGTCATAA

Upstream 100 bases:

>100_bases
CAACGTGACATTTCAGTCCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAAGCAGAGAGCG
TGAAGCCACACGAGAACACG

Downstream 100 bases:

>100_bases
AAGGAAAAATAGAGATGAAAATATACTCAGCGCTATTGCTGGCGGGGACCGCGCTCTTTTTCACCCATCCCGCGCTGGCG
ACGGTTTGCCGTAATTCAAA

Product: outer membrane usher protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 870; Mature: 870

Protein sequence:

>870_residues
MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV
ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS
LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA
ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY
GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW
QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS
YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG
AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS

Sequences:

>Translated_870_residues
MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV
ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS
LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA
ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY
GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW
QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS
YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG
AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS
>Mature_870_residues
MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV
ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS
LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA
ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY
GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW
QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS
YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG
AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family

Homologues:

Organism=Escherichia coli, GI1786744, Length=857, Percent_Identity=70.5950991831972, Blast_Score=1289, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=867, Percent_Identity=47.4048442906574, Blast_Score=804, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=874, Percent_Identity=47.254004576659, Blast_Score=780, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=856, Percent_Identity=37.9672897196262, Blast_Score=556, Evalue=1e-159,
Organism=Escherichia coli, GI1786332, Length=880, Percent_Identity=32.2727272727273, Blast_Score=390, Evalue=1e-109,
Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=30.3140096618358, Blast_Score=318, Evalue=1e-87,
Organism=Escherichia coli, GI87081778, Length=872, Percent_Identity=28.2110091743119, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1789610, Length=704, Percent_Identity=26.7045454545455, Blast_Score=140, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FIMD_SALTY (P37924)

Other databases:

- EMBL:   L19338
- EMBL:   AE006468
- RefSeq:   NP_459541.1
- ProteinModelPortal:   P37924
- PRIDE:   P37924
- GeneID:   1252066
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0546
- NMPDR:   fig|99287.1.peg.531
- HOGENOM:   HBG511492
- OMA:   ANWQATY
- ProtClustDB:   PRK15198
- BioCyc:   STYP99287:STM0546-MONOMER
- InterPro:   IPR000015
- InterPro:   IPR018030

Pfam domain/function: PF00577 Usher

EC number: NA

Molecular weight: Translated: 95128; Mature: 95128

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK
CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC
GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAF
CCCCCCCEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC
PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA
CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE
ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHCCCHHHHHHH
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL
HHHCCCCCEEEECCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE
TIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE
EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC
GRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNL
CCEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC
GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
CCCCEEEEEEHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQ
HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC
NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRY
CCCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHCCCCCCCEEEEEECCCCHHHHCCCHH
ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASAS
HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC
WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEECCCCCCEEEE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT
CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC
ARCIAPYALAEDSLKQAITIASATCIRPAS
CEEEECHHHHHHHHHHHHHHHHHEEECCCC
>Mature Secondary Structure
MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK
CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC
GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAF
CCCCCCCEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC
PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA
CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE
ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHCCCHHHHHHH
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL
HHHCCCCCEEEECCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE
TIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE
EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC
GRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNL
CCEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC
GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
CCCCEEEEEEHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQ
HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC
NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRY
CCCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHCCCCCCCEEEEEECCCCHHHHCCCHH
ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASAS
HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC
WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEECCCCCCEEEE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT
CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC
ARCIAPYALAEDSLKQAITIASATCIRPAS
CEEEECHHHHHHHHHHHHHHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609