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The map label for this gene is ybaO [H]

Identifier: 16763840

GI number: 16763840

Start: 516267

End: 516725

Strand: Direct

Name: ybaO [H]

Synonym: STM0459

Alternate gene names: 16763840

Gene position: 516267-516725 (Clockwise)

Preceding gene: 16763838

Following gene: 16763841

Centisome position: 10.63

GC content: 52.29

Gene sequence:

>459_bases
ATGTTAGATAAAATTGACCGTAAGCTGCTTTGCTTATTGCAGCAGGATTGTACCCTCTCTTTGCAGGCGCTGGCGGATGC
CGTTAATCTGACGACAACGCCTTGCTGGAAGCGGCTTAAACGCCTGGAAGATGACGGTATCCTGCTTGGCAGGGTCGCGC
TGCTGGACCCGGAAAAACTGGGGCTGGGATTAACCGCTTTCGTGTTGATAAAAACGCAGCACCACAGCAGTGAATGGTAC
TGTCGGTTCGTGACCGTCGTCTCTGAGATGCCGGAAGTGCTTGGCTTCTGGCGGATGGCGGGGGAATACGACTATCTGAT
GCGAGTTCAGGTGGCCGACATGAAGCGGTATGACGACTTCTATAAACGTCTGGTCAATAGCGTCCCAGGACTGTCAGACG
TCACCTCCAGTTTTGCGATGGAACAGATTAAGTACACCACCTCTCTGCCCATTGAATAA

Upstream 100 bases:

>100_bases
ATCATTTTGTGCCAAGAGTAGCGAAAAGTACGGAAAAAATTGTTGCTATTTGACCTTTAAATTACAATGTAAGGAGAAAA
ATATTCTCTATGGAGTGGGT

Downstream 100 bases:

>100_bases
TTCTCCCGGTATTGCCGGAAATCATATCAGGAAATAACGCGTGCGATTATTTGCTCAATTAAGCTGGTACTTTCGCCGGG
AATGGCGTCGCTATCTTGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWY
CRFVTVVSEMPEVLGFWRMAGEYDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE

Sequences:

>Translated_152_residues
MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWY
CRFVTVVSEMPEVLGFWRMAGEYDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
>Mature_152_residues
MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWY
CRFVTVVSEMPEVLGFWRMAGEYDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=95.3947368421053, Blast_Score=305, Evalue=9e-85,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=33.7748344370861, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17456; Mature: 17456

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLGRVALLDPEKL
CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEECHHHH
GLGLTAFVLIKTQHHSSEWYCRFVTVVSEMPEVLGFWRMAGEYDYLMRVQVADMKRYDDF
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHHH
YKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLGRVALLDPEKL
CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEECHHHH
GLGLTAFVLIKTQHHSSEWYCRFVTVVSEMPEVLGFWRMAGEYDYLMRVQVADMKRYDDF
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHHH
YKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]