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The map label for this gene is secF [H]

Identifier: 16763788

GI number: 16763788

Start: 464189

End: 465160

Strand: Direct

Name: secF [H]

Synonym: STM0408

Alternate gene names: 16763788

Gene position: 464189-465160 (Clockwise)

Preceding gene: 16763787

Following gene: 16763789

Centisome position: 9.56

GC content: 54.22

Gene sequence:

>972_bases
GTGGCACAGGAATACACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTTCTGGGCATT
CGGCATCTCCGGGCTGTTGCTGATCGCGGCCATTGTCATTATGGGCGTACGCGGGTTTAACTGGGGGCTGGATTTCACCG
GTGGTACGGTAATTGAAATCACGCTGGAAAAACCGGCTGAAATGGACGTGATGCGCGAAGCGCTGCAAAAAGCGGGCTAT
GAAGAGCCGCAGTTGCAGAACTTTGGCAGCAGTCACGACATTATGGTGCGTATGCCGCCAACCGAAGGTGAAACCGGCGG
TCAGGTACTGGGTAGCAAAGTGGTGACGATCATTAATGAAGCCACCAACCAGAATGCGGCCGTGAAGCGTATTGAATTCG
TGGGGCCAAGCGTGGGCGCCGATCTGGCGCAAACCGGCGCTATGGCGCTGCTGGTGGCGTTGATCTCTATCCTCGTTTAT
GTCGGTTTCCGCTTTGAGTGGCGACTGGCGGCAGGGGTGGTCATCGCGCTGGCGCACGACGTGATCATTACGCTGGGGAT
ACTGTCGCTTTTCCATATCGAGATTGACCTGACCATTGTGGCATCGTTGATGTCGGTGATCGGTTACTCGCTGAATGACA
GTATCGTGGTCTCTGACCGTATTCGTGAAAACTTCCGCAAAATCCGTCGCGGGACGCCTTACGAAATCTTTAACGTGTCG
CTGACCCAGACGCTACACCGTACGTTGATTACCTCCGGTACGACGTTAGTGGTAATTCTGATGCTGTACCTCTTCGGCGG
TCCGGTACTGGAAGGCTTCTCGCTGACGATGCTGATCGGTGTCTCTATTGGTACGGCATCTTCTATCTATGTCGCATCGG
CGCTGGCGCTGAAACTCGGTATGAAGCGCGAGCATATGCTGCAGCAGAAAGTCGAAAAAGAAGGGGCGGATCAGCCGTCC
ATTCTGCCGTAA

Upstream 100 bases:

>100_bases
GCGACGTCGATGTTTACCGCGATTATCGGTACGCGTGCTATCGTAAACCTGCTATATGGCGGCAAGCGCGTCACTAAGCT
GTCAATCTGAGGAGTGCGAT

Downstream 100 bases:

>100_bases
ACACGTATTTAAGTGTTATCTGAATCCCGGTCATGCGATCGGGATTTTTTTATTTATGTACCATGACGATAAACATTACT
GACAGTATGCTGTCAGGAGC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGY
EEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVY
VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS
LTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPS
ILP

Sequences:

>Translated_323_residues
MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGY
EEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVY
VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS
LTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPS
ILP
>Mature_322_residues
AQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYE
EPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYV
GFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSL
TQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSI
LP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=323, Percent_Identity=95.3560371517028, Blast_Score=630, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35377; Mature: 35246

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEI
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
TLEKPAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINE
EECCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
ATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHD
HCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
VIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEHH
LTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLG
HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHC
MKREHMLQQKVEKEGADQPSILP
CCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEI
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
TLEKPAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINE
EECCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
ATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHD
HCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
VIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEHH
LTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLG
HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHC
MKREHMLQQKVEKEGADQPSILP
CCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]