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The map label for this gene is secD [H]

Identifier: 16763787

GI number: 16763787

Start: 462331

End: 464178

Strand: Direct

Name: secD [H]

Synonym: STM0407

Alternate gene names: 16763787

Gene position: 462331-464178 (Clockwise)

Preceding gene: 16763786

Following gene: 16763788

Centisome position: 9.52

GC content: 54.49

Gene sequence:

>1848_bases
GTGTTAAACCGTTATCCTTTGTGGAAGTACATCATGCTGGTCGTCGTGATTATCGTCGGCCTGCTTTACGCACTTCCCAA
CCTGTATGGTGAGGATCCGGCTGTTCAAATCACTGGCGTGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCC
AGAAAACGTTACAAGAAGAAAAAATTCCCGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACACC
ACCGATACCCAGCTACGCGCCCGTGAAGCGCTGATGAGCGTGCTGGGGGATAAATATGTCGTGGCGCTTAACCTTGCGCC
GGCTACGCCGCGCTGGTTGGCGGCTATTCACGCCGATCCGATGAAGCTCGGTCTTGATCTGCGCGGCGGCGTTCACTTCC
TGATGGAAGTGGATATAGATACCGCGTTAGGTAAACTCCAGGAACAAAATATCGATAGCCTGCGCAGCGATCTGCGTGAA
AAAGGCATTCCTTATACCACCGTTCGTAAAGAAAATAATTATGGGTTGAGCATCACGTTCCGTGACAGCAAAGCGCGTGA
TGAGGCGATCGCCTATCTGACGCCGCGTCATCGTGACCTGGTGATTTCCAGCCAGAGCGGTAATCAACTTCGCGCGGTAA
TGACCGATGCGCGCCTGAGCGAAGCGCGTGAATACGCCGTTCAGCAGAACATTAATATTCTGCGTAACCGTGTTAACCAA
CTGGGCGTCGCGGAGCCTGTCGTACAACGCCAGGGCGCAGACCGTATTGTGGTTGAGCTGCCGGGTATCCAGGATACCGC
TCGCGCGAAAGAAATTCTCGGCGCGACCGCGACGCTGGAATTCCGTCTGGTGAATACCAACGTTGACCAGGCCGCCGCTG
CTGCCGGGCGCGTACCGGGTGATTCCGAAGTGAAACAGACCCGCGAAGGTCAGCCGGTGGTATTGTACAAACGCGTGATC
CTCACCGGCGACCATATCACCGACTCGACGTCCAGCCAGGATGAATATAACCAACCGCAGGTTAACATCTCGCTGGATAG
CGCAGGCGGCAATATCATGTCTAACTTCACTAAGGACAATATCGGCAAACCGATGGCGACCCTGTTTGTGGAGTATAAAG
ACAGCGGTAAGAAAGACGCTAACGGTCGCGCCGTACTGGTGAAACAGGAAGAAGTGATTAACATTGCCAACATCCAGTCC
CGGCTGGGTAACAGCTTCCGTATTACCGGTATCAGCAACCCGAACGAAGCGCGTCAGCTCTCGTTGTTGCTGCGTGCGGG
CGCCCTGATTGCGCCGATTCAGATCGTTGAAGAGCGCACCATTGGCCCGACTCTGGGTATGCAGAACATCAAGCAGGGCC
TGGAAGCCTGTCTGGCCGGTCTGGTGGTCTCCATCCTGTTCATGATCTTCTTCTATAAGAAGTTTGGTCTGATTGCGACC
AGCGCGTTAGTGGCTAACCTAGTGTTGATTGTCGGTATCATGTCGCTGTTGCCGGGGGCAACGCTCAGTATGCCGGGGAT
TGCGGGTATCGTGTTAACCCTTGCGGTGGCGGTCGACGCCAACGTTCTGATTAACGAACGTATCAAAGAAGAGTTGAGTA
ATGGCCGCACGGTACAGCAGGCGATAAACGAAGGCTATGCCGGCGCGTTCAGTTCCATCTTCGATGCGAACATCACGACG
CTGATTAAAGTCATCATTCTGTATGCTGTCGGTACCGGGGCAATTAAAGGGTTCGCGATTACGACCGGTATCGGTGTGGC
GACGTCGATGTTTACCGCGATTATCGGTACGCGTGCTATCGTAAACCTGCTATATGGCGGCAAGCGCGTCACTAAGCTGT
CAATCTGA

Upstream 100 bases:

>100_bases
CACCACGGAAGTGGTTATCAAACGTGACTTCGTAGCTGCCGTTCTGCCGAAAGGCACCATGAAGGCGCTGTAATATTTCG
TTTTCCCAAAGGGAACTGCC

Downstream 100 bases:

>100_bases
GGAGTGCGATGTGGCACAGGAATACACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACT
TCTGGGCATTCGGCATCTCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDT
TDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLRE
KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ
LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVI
LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS
RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT
SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITT
LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI

Sequences:

>Translated_615_residues
MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDT
TDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLRE
KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ
LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVI
LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS
RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT
SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITT
LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI
>Mature_615_residues
MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDT
TDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLRE
KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ
LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVI
LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS
RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT
SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITT
LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=615, Percent_Identity=95.1219512195122, Blast_Score=1190, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66588; Mature: 66588

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
KIPAKSVALEEGAILARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADP
CCCHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCH
MKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITF
HHCCCCCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEE
RDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ
CCCCCCCCEEEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPG
CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCCC
DSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN
CHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCHHC
IGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGISNPNEARQL
CCCCHHHEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
SLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT
HHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQ
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
AINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAI
HHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
VNLLYGGKRVTKLSI
HHHHHCCCEEEEECC
>Mature Secondary Structure
MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
KIPAKSVALEEGAILARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADP
CCCHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCH
MKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITF
HHCCCCCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEE
RDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ
CCCCCCCCEEEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPG
CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCCC
DSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN
CHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCHHC
IGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGISNPNEARQL
CCCCHHHEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
SLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT
HHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQ
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
AINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAI
HHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
VNLLYGGKRVTKLSI
HHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]