| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is safC [H]
Identifier: 16763684
GI number: 16763684
Start: 343566
End: 346076
Strand: Direct
Name: safC [H]
Synonym: STM0301
Alternate gene names: 16763684
Gene position: 343566-346076 (Clockwise)
Preceding gene: 16763683
Following gene: 16763685
Centisome position: 7.07
GC content: 54.68
Gene sequence:
>2511_bases ATGAAGTTCAAACAACCTGCCTTGCTACTGTTCATCGCGGGAGTGGTTCATTGCGCAAATGCGCACACTTACACATTCGA TGCATCAATGTTGGGCGATGCAGCGAAAGGGGTTGATATGTCGCTCTTTAACCAGGGGGTACAACAGCCAGGGACTTATC GCGTGGACGTGATGGTGAATGGTAAACGTGTCGACACCCGTGATGTGGTGTTCAAATTGGAAAAGGATGGGCAAGGAACG CCTGTTCTGGCTCCTTGTTTGACGGTCAGTCAGCTTTCACGCTACGGCGTAAAAACGGAAGATTACCCTCAGTTGTGGAA AGCAGCAAAGCCCCCAGATGAGTGTGCGGATCTGACCGCCATTCCACAGGCTAAAGCGGTACTGGATATCAATAATCAGC AACTGCAACTGAGTATTCCGCAGTTGGCGTTGCGTCCGGAATTTAAGGGGATCGCTCCAGAAGATCTTTGGGATGATGGT ATTCCGGCGTTTCTGATGAACTACAGTGCGAGGACAACGCAGACGGATTACAAAATGGATATGGTGGGGCGTGACAACTC TTCCTGGGTACAACTGCAACCGGGAATCAATATAGGTGCGTGGCGTGTCCGCAATGCGACCAGCTGGCAGCGGAGTAGTC AACTGTCGGGGAAGTGGCAGGCAGCATATACCTATGCTGAGCGTGGACTGTACTCACTAAAAAGTCGTCTGACTCTGGGG CAAAAGACTTCGCAGGGGGAGATATTTGATAGTGTGCCATTTACCGGTGTGATGTTGGCATCGGATGACAACATGGTGCC CTACAGTGAGCGGCAGTTTGCTCCGGTAGTGCGTGGGATTGCCCGCACGCAGGCTCGGGTGGAGGTCAAACAGAATGGTT ACACCATTTACAACACCACTGTGGCGCCCGGACCGTTTGCACTGCGGGATCTGTCGGTAACAGACAGTAGTGGTGATCTG CATGTCACCGTGTGGGAGGCCGATGGCAGTACACAAATGTTTGTGGTGCCGTATCAGACCCCGGCGATAGCACTGCACCA GGGATATTTGAAGTACAGCCTGTTGGCGGGCCGATACCGATCGTCAGACTCTGCAACGGATAAGGCGCAGATCGCGCAGG CTACGTTGATGTATGGTCTGCCGTGGAATCTCACTGCATACGGCGGTATACAGAGTGCAACGCACTATCAAGCTGCATTG CTTGGTTTGGGGGGATCTCTCGGGCGGTGGGGGAGTTTATCTGTCGATGGAAGCGACACACACAGTCAGCGTCAGGGGGA GGCGGTACAGCAAGGAGCCTCCTGGCGACTGCGTTACAGCAACCAGCTGACTGCGACGGGGACAAATTTTTTTCTGACGA GATGGCAGTATGCCTCGCAGGGCTATAACACCCTATCCGATGTGCTCGACAGTTATCGACATAATGGCAACCGTCTATGG TCGTGGCGGGAAAATTTGCAGCCGAGCTCGCGTACTACCCTGATGTTGAGTCAGTCATGGGGGAGGCATTTGGGCAATCT GAGTTTAACCGGTTCCCGTACCGACTGGCGTAATCGCCCCGGTCATGATGACAGCTACGGACTGAGTTGGGGAACCTCTA TCGGAGGGGGCTCGCTGTCATTGAACTGGAATCAAAACAGAACGCTGTGGCGCAATGGCGCGCACCGTAAAGAGAACATA ACCAGCCTGTGGTTCAGTATGCCATTAAGCCGCTGGACGGGGAATAATGTAAGTGCTAGTTGGCAGATGACTTCACCATC ACACGGTGGTCAGACGCAACAAGTGGGGGTCAACGGAGAGGCATTCAGTCAGCAACTGGATTGGGAGGTGCGTCAGAGTT ACCGTGCCGATGCCCCGCCAGGTGGTGGTAATAACAGCGCATTGCACTTGGCATGGAATGGGGATTACGGCCTGTTAGGT GGTGACTATAGCTACAGCCGGGCGATGCGCCAGATGGGAGTCAATATCGCGGGAGGTATAGTTATCCACCATCATGGTGT GACGCTGGGGCAACCTTTGCAAGGCTCAGTGGCGCTGGTTGAAGCGCCAGGGGCCTCGGGGGTGCCAGTTGGCGGCTGGC CTGGCGTTAAGACGGATTTTCGTGGCGACACCACAGTGGGCAACCTGAACGTCTATCAGGAGAATACAGTCAGCCTCGAT CCGTCGCGACTACCGGATGACGCAGAGGTCACACAAACCGATGTGCGCGTGGTGCCAACCGAAGGGGCGGTGGTGGAAGC GAAGTTTCACACTCGCATCGGGGCCAGGGCACTGATGACGCTGAAACGGGAAGATGGTAGCGCCATTCCTTTCGGGGCGC AGGTTACAGTCAATGGGCAGGATGGCAGTGCTGCTCTGGTGGATACTGATAGCCAGGTTTATCTCACTGGTTTGGCGGAT AAGGGCGAACTGACGGTGAAATGGGGAGCACAGCAATGTCGGGTTAACTACCGCCTACCTGCCCACAAGGGAATCGCGGG CTTGTATCAAATGAGCGGTCTCTGCAGATAG
Upstream 100 bases:
>100_bases CCCATGGTGATATCGAGTGGAGAGTTATTACAGACTTTGGTGGTGAAAGTCATCCGTTCCACTACGTTCTTAAATAAATC CAGGGGCTTAGCGGCAGAAA
Downstream 100 bases:
>100_bases CCGATTCTGAAGGAGAGAATAATGTGGATGAAAATACAGCGAGTGAAAACGGTTATCTATAGCGTAAGCTTACTGGTCGC TGCCAGTAGCTTGGTGCCGA
Product: fimbrial usher
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGDYGLLG GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR
Sequences:
>Translated_836_residues MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGDYGLLG GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR >Mature_836_residues MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGDYGLLG GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR
Specific function: Involved in the export and assembly of AFA-III afimbrial adhesin subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=868, Percent_Identity=36.6359447004608, Blast_Score=502, Evalue=1e-143, Organism=Escherichia coli, GI1787172, Length=857, Percent_Identity=34.6557759626604, Blast_Score=485, Evalue=1e-138, Organism=Escherichia coli, GI1789533, Length=847, Percent_Identity=35.655253837072, Blast_Score=460, Evalue=1e-130, Organism=Escherichia coli, GI1786744, Length=846, Percent_Identity=35.4609929078014, Blast_Score=451, Evalue=1e-127, Organism=Escherichia coli, GI1786332, Length=864, Percent_Identity=27.7777777777778, Blast_Score=308, Evalue=1e-84, Organism=Escherichia coli, GI1788427, Length=765, Percent_Identity=29.5424836601307, Blast_Score=298, Evalue=1e-81, Organism=Escherichia coli, GI87081778, Length=833, Percent_Identity=26.7707082833133, Blast_Score=235, Evalue=1e-62, Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=23.6093943139679, Blast_Score=144, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 91462; Mature: 91462
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN CCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCHHCCCCHHHHHHHHCCCCCEEEEEEEC GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA CCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHCCCC IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD CCCCEEEEEECCCEEEEECCCEEECCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCEEEE MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG EECCCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCC QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT CCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEEE VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR ECCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHEEEEHHCCCC SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAALLGLGGSLGRWGSLSVDGSDT CCCCCCCHHHHHHEEEEECCCCCEEECCCCCCCHHHHHHEEECCCCCCCCEEEEECCCCC HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW CHHHHCHHHHCCCCEEEEECCEEEECCCEEEEEEEEHHHCCHHHHHHHHHHHHCCCCEEE SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS EHHHCCCCCCCEEEEEECCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE EEECCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCEEECCCHH AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGDYGLLGGDYSYSRAMRQMGVNIAGGI HHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHCCEEECEE VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD EEEECCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCEEEC PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ CCCCCCCCCEEECCEEEEECCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCEEEEECC DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR CCCEEEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCC >Mature Secondary Structure MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN CCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCHHCCCCHHHHHHHHCCCCCEEEEEEEC GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA CCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHCCCC IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD CCCCEEEEEECCCEEEEECCCEEECCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCEEEE MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG EECCCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCC QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT CCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEEE VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR ECCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHEEEEHHCCCC SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAALLGLGGSLGRWGSLSVDGSDT CCCCCCCHHHHHHEEEEECCCCCEEECCCCCCCHHHHHHEEECCCCCCCCEEEEECCCCC HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW CHHHHCHHHHCCCCEEEEECCEEEECCCEEEEEEEEHHHCCHHHHHHHHHHHHCCCCEEE SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS EHHHCCCCCCCEEEEEECCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE EEECCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCEEECCCHH AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGDYGLLGGDYSYSRAMRQMGVNIAGGI HHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHCCEEECEE VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD EEEECCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCEEEC PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ CCCCCCCCCEEECCEEEEECCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCEEEEECC DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR CCCEEEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002584 [H]