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The map label for this gene is ytbD [H]

Identifier: 16763640

GI number: 16763640

Start: 296912

End: 298087

Strand: Direct

Name: ytbD [H]

Synonym: STM0257

Alternate gene names: 16763640

Gene position: 296912-298087 (Clockwise)

Preceding gene: 16763638

Following gene: 16763641

Centisome position: 6.11

GC content: 55.78

Gene sequence:

>1176_bases
ATGCCTCTCGCTTTATTTGCACTGACAATAAGTGCTTTCGCTATCGGTACGACTGAGTTTGTGATTGTCGGCCTGGTGCC
GACCATTGCTCAACAACTGGCTATCTCGTTACCTTCCGCCGGAATGCTGGTTTCAATCTATGCGCTGGGTGTGGCTATTG
GCGCGCCGGTGCTAACCGCGCTGACCGGACGCCTGCCGCGTAAACAGTTACTGGTCGCGCTGATGGTCTTGTTTACGGCG
GGGAATTTGCTGGCATGGCAGGCACCGGGCTATATGACATTAATCGTCGCCCGTCTGCTGACGGGCCTGGCGCACGGCGT
GTTCTTCTCGATTGGATCTACCATCGCGACAAGTCTGGTGCCAAAAGAGAAAGCGGCTTCTGCGATCGCTATTATGTTTG
GTGGTTTAACGGTAGCGCTGGTCACGGGCGTGCCGCTGGGAACATTTATCGGTCAGCATTTTGGCTGGCGTGAGACCTTC
CTTGCGGTATCACTGTTAGGCGTGATTGCGCTGATGAGCAGTCAATTGCTGATTCCGGCCAATATTCCCGGTCGGGCGGC
CGCCAGCATTCGTGACCAGGTGAAAGTACTGACTCATCCTCGTCTGTTGCTGATTTACGCCGTTACGGCGCTGGGCTACG
GCGGGGTATTCACGGCATTCACCTTCCTGGCGCCAATGATGCAGGATCTGGCGGGATTCTCCCCGGCAGCGGTAAGCTGG
ATCTTACTGGGGTATGGCGTATCAGTGGCTATCGGCAATATCTGGGGCGGTAAACTGGCTGATAAGCATGGTGCCGTGCC
GGCGCTGAAATTCATTTTCGCCGCGCTGTTTGTTCTGCTTATGGTCTTCCAGGTGACGGCCTCCACGCAGTATGCTGCGC
TGGCTACCATCCTAGTGATGGGGGTCTTTGCCTTCGGTAACGTACCGGGGTTGCAGGTCTACGTGGTACAGAAAGCGGAA
CAATTCACGCCTAATGCGGTAGATGTGGCGTCAGGTCTGAACATTGCGGCGTTTAACATTGGTATTGCGCTGGGCTCCGT
GATTGGCGGGCAAACGGTGGAGCATTACGGTTTGGCGCAGACGCCGTGGATTGGCGCCCTCATTGTTCTGGTGGCTTTCC
TGCTGATGGGTGTCAGCGGACGTCTTGATAAACCTGTACGCATTGCTCTGGAGTAA

Upstream 100 bases:

>100_bases
GCTCCTGAAGCAAAATTAAATTGATATTTTGGCTATTTTTGTCATTAAAACATCCAGGCATACTGCGTGTCATCTGATTA
CTGCTGTTATGGAGTTATGT

Downstream 100 bases:

>100_bases
ATTATTGATGTAAGCGCCTACTTACAAAACAAACTGCAATTGTTCGTTGAAAGTGAGTGCTAAAATCCCTATAACAGAAG
AACCAGTCCGGTTGAGGACT

Product: drug efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTA
GNLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGVFAFGNVPGLQVYVVQKAE
QFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE

Sequences:

>Translated_391_residues
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTA
GNLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGVFAFGNVPGLQVYVVQKAE
QFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE
>Mature_390_residues
PLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTAG
NLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFL
AVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSWI
LLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGVFAFGNVPGLQVYVVQKAEQ
FTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=378, Percent_Identity=41.5343915343915, Blast_Score=238, Evalue=6e-64,
Organism=Escherichia coli, GI1786595, Length=352, Percent_Identity=31.5340909090909, Blast_Score=184, Evalue=9e-48,
Organism=Escherichia coli, GI1787808, Length=366, Percent_Identity=29.5081967213115, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693198, Length=387, Percent_Identity=24.8062015503876, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40629; Mature: 40498

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLV
HHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEC
NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM
HHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GVFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEHYGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHCCCCC
TPWIGALIVLVAFLLMGVSGRLDKPVRIALE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
>Mature Secondary Structure 
PLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTA
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLV
HHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEC
NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM
HHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GVFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEHYGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHCCCCC
TPWIGALIVLVAFLLMGVSGRLDKPVRIALE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]