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The map label for this gene is atpD1 [H]

Identifier: 167626199

GI number: 167626199

Start: 5206203

End: 5207579

Strand: Reverse

Name: atpD1 [H]

Synonym: Shal_4294

Alternate gene names: 167626199

Gene position: 5207579-5206203 (Counterclockwise)

Preceding gene: 167626200

Following gene: 167626198

Centisome position: 99.63

GC content: 45.53

Gene sequence:

>1377_bases
ATGAGCACAGGTACTGTTGTCCAAGTCATTGGCGCGGTTGTGGACGTAGAGTTTCCACATGATGCCGTACCTCAGATATA
TGACGCTCTAGAGATCAAAAGTGAAGGCTTGGTGCTGGAAGTTCAGCAGCAACTTGGTGGTGGTGTAGTTCGTACCATCG
CTATGGGTACTTCAGATGGTCTGCGTCGTGGTCTTGAGGTCGTAAACTCTGGTTCACCAATTTCTGTTCCGGTAGGGTCA
GCGACTCTTGGCCGAATCATGAACGTTTTAGGTGATCCTATTGATGAATGTGGTGAAATCGGTGAGCAAGAACGTTATGT
TATTCACCGTGAAGCGCCTTCATATGAAGATCAATCAAGCTCAACTGAACTTTTAGAAACGGGTATCAAGGTTATCGACC
TTGTTTGTCCATTTGCTAAAGGTGGTAAAGTTGGTCTGTTTGGTGGAGCTGGTGTTGGTAAGACCGTCAACATGATGGAA
CTTATTAACAACATCGCTAAAGCACACTCAGGTTTATCTGTATTTGCTGGTGTAGGTGAGCGTACTCGAGAGGGTAACGA
TTTCTACTACGAGATGAAAGATTCTGGTGTTCTCGACAAAGTGGCCATGGTTTATGGTCAGATGAACGAGCCTCCAGGAA
ACCGTCTACGTGTGGCACTTACCGGTCTAACTATGGCTGAGAAGTTCCGTGACGAAGGTAAAGATGTTCTTTTCTTCGTT
GATAACATCTATCGTTACACCTTGGCAGGTACTGAAGTATCTGCACTGCTAGGCCGTATGCCATCAGCAGTAGGTTACCA
GCCAACATTGGCTGAAGAGATGGGTGTACTTCAGGAGCGTATTACATCGACTAAGACAGGGTCTATTACCTCTGTTCAAG
CCGTATACGTACCTGCGGATGACTTGACGGATCCGTCACCAGCAACAACCTTCGCTCACTTAGATGCGACTGTTGTACTG
TCACGTAACATCGCCTCTATGGGTATTTACCCAGCGGTTGACCCATTGGATTCGACTTCGCGTCAGCTAGATCCTTTGGT
TGTTGGTCAAGAGCATTATGATGTTGCGAGTGGTGTGCAGACTGTACTTCAGCGCTATAAAGAGCTGAAAGATATTATTG
CGATTCTTGGTATGGATGAATTATCTGATGAAGATAAGACAACTGTAGCGCGTGCTCGTAAGATTGAAAAATATCTTTCA
CAGCCTTTCTTCGTAGCAGAAGTATTCACCGGTTCTCCAGGTAAGTACGTTTCTCTTAAAGACACAATCCGTGGCTTCAA
GGGCATTCTAGAGGGTGAGTTTGATCACCTTCCAGAGCAAGCGTTCTACATGGTTGGTTCAATCGACGAAGCTGTTGAGA
AAGCTAACAAAAAATAA

Upstream 100 bases:

>100_bases
AAGCCCGTCAAGCTGCTATTACGCAGGAACTGTCGGAAATTGTTGCTGGCGCTGCAGCCGTTTAGGCTAGGTAACGAATA
CAAGTTTTAGAGGATTAATC

Downstream 100 bases:

>100_bases
CTAGGTCTTTGACTTAGTTTAAGGAGAACGGATGGCAGCCATGACAGTACAGCTTGATATGGTAAGTGCAGAGAGCAATA
TCTTTTCTGGTCGAGTAGCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSTGTVVQVIGAVVDVEFPHDAVPQIYDALEIKSEGLVLEVQQQLGGGVVRTIAMGTSDGLRRGLEVVNSGSPISVPVGS
ATLGRIMNVLGDPIDECGEIGEQERYVIHREAPSYEDQSSSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYYEMKDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVL
SRNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYDVASGVQTVLQRYKELKDIIAILGMDELSDEDKTTVARARKIEKYLS
QPFFVAEVFTGSPGKYVSLKDTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK

Sequences:

>Translated_458_residues
MSTGTVVQVIGAVVDVEFPHDAVPQIYDALEIKSEGLVLEVQQQLGGGVVRTIAMGTSDGLRRGLEVVNSGSPISVPVGS
ATLGRIMNVLGDPIDECGEIGEQERYVIHREAPSYEDQSSSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYYEMKDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVL
SRNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYDVASGVQTVLQRYKELKDIIAILGMDELSDEDKTTVARARKIEKYLS
QPFFVAEVFTGSPGKYVSLKDTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK
>Mature_457_residues
STGTVVQVIGAVVDVEFPHDAVPQIYDALEIKSEGLVLEVQQQLGGGVVRTIAMGTSDGLRRGLEVVNSGSPISVPVGSA
TLGRIMNVLGDPIDECGEIGEQERYVIHREAPSYEDQSSSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIAKAHSGLSVFAGVGERTREGNDFYYEMKDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLS
RNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYDVASGVQTVLQRYKELKDIIAILGMDELSDEDKTTVARARKIEKYLSQ
PFFVAEVFTGSPGKYVSLKDTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=465, Percent_Identity=69.6774193548387, Blast_Score=645, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=303, Percent_Identity=27.7227722772277, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI19913426, Length=397, Percent_Identity=24.6851385390428, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI19913428, Length=404, Percent_Identity=25.2475247524752, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI50345984, Length=363, Percent_Identity=24.2424242424242, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI4757810, Length=363, Percent_Identity=24.2424242424242, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=459, Percent_Identity=86.0566448801743, Blast_Score=811, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=334, Percent_Identity=29.3413173652695, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1790172, Length=428, Percent_Identity=25.2336448598131, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=67.5268817204301, Blast_Score=628, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=325, Percent_Identity=27.3846153846154, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=421, Percent_Identity=23.9904988123515, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=421, Percent_Identity=23.9904988123515, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=25.214899713467, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=423, Percent_Identity=25.0591016548463, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=328, Percent_Identity=23.780487804878, Blast_Score=86, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=69.2139737991266, Blast_Score=637, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=386, Percent_Identity=24.8704663212435, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=402, Percent_Identity=25.1243781094527, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=27.4678111587983, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.5344827586207, Blast_Score=630, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=464, Percent_Identity=63.3620689655172, Blast_Score=585, Evalue=1e-167,
Organism=Drosophila melanogaster, GI20129479, Length=330, Percent_Identity=27.2727272727273, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583992, Length=305, Percent_Identity=27.5409836065574, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24583988, Length=324, Percent_Identity=26.5432098765432, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24583986, Length=324, Percent_Identity=26.5432098765432, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24583984, Length=324, Percent_Identity=26.5432098765432, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI281361666, Length=425, Percent_Identity=25.4117647058824, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24646341, Length=425, Percent_Identity=25.4117647058824, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17136796, Length=425, Percent_Identity=25.4117647058824, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24658560, Length=331, Percent_Identity=24.4712990936556, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=56.043956043956, Blast_Score=92, Evalue=8e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49435; Mature: 49304

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGTVVQVIGAVVDVEFPHDAVPQIYDALEIKSEGLVLEVQQQLGGGVVRTIAMGTSDG
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCEEEHEECCCCHH
LRRGLEVVNSGSPISVPVGSATLGRIMNVLGDPIDECGEIGEQERYVIHREAPSYEDQSS
HHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCCCCCCCCC
STELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYYEMKDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
CCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPAD
EHHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYDVASGVQ
CCCCCCCCCEEHHCCEEEEEECCHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
TVLQRYKELKDIIAILGMDELSDEDKTTVARARKIEKYLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK
HHHHHHHHHHCCHHHHCCHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure 
STGTVVQVIGAVVDVEFPHDAVPQIYDALEIKSEGLVLEVQQQLGGGVVRTIAMGTSDG
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCEEEHEECCCCHH
LRRGLEVVNSGSPISVPVGSATLGRIMNVLGDPIDECGEIGEQERYVIHREAPSYEDQSS
HHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCCCCCCCCC
STELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYYEMKDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
CCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPAD
EHHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYDVASGVQ
CCCCCCCCCEEHHCCEEEEEECCHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
TVLQRYKELKDIIAILGMDELSDEDKTTVARARKIEKYLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK
HHHHHHHHHHCCHHHHCCHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA