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The map label for this gene is fliN [H]

Identifier: 167626139

GI number: 167626139

Start: 5141974

End: 5142330

Strand: Reverse

Name: fliN [H]

Synonym: Shal_4234

Alternate gene names: 167626139

Gene position: 5142330-5141974 (Counterclockwise)

Preceding gene: 167626140

Following gene: 167626138

Centisome position: 98.38

GC content: 48.18

Gene sequence:

>357_bases
ATGGCTGAACATAATATTCTACAAGATGAAGACTTTTTACTCGATGATGACTTTTTTGCTGAAGAGCAGAGCCACAAACC
AAAGGTTCAGGCTAAGCCAGTAAAAGATATGTCATTTTTCCATCAGCTTCCGGTACACGTGACTTTAGAGCTTGCCAGCG
TAGAGATGTCTCTCGGCGAGTTGGCACAGATGGGGGAGGGAGATGTGGTCGCACTCGACCGTATGGTGGGAGAGCCGCTA
GATATTCGAGTTAATGGTGCATTGCTCGGACGTGGGGAAGTCGTTGAGGTGAATGGTCGTTATGGGGTGCGCTTGCTTGA
AGTTGAAGCGACCAGCCTAACTGGAGCTGTTGATTAA

Upstream 100 bases:

>100_bases
GTGGGTAAACGTCCACTTTTTTACGCCACAGTTCATACCCATGAGGGACAGATGGTGGCCAAATTGACCCAAGAAGCCTT
TCAAATGGAGGAACAATCCA

Downstream 100 bases:

>100_bases
CTATGTGGCGAGTGTTGCTGGTTTTTGTGTTGAGTTTTTCATCGGCGGCTTATGCGAGTGATGGCTTAACGTTATTTTCT
CTGGCAGATGGTGATAAGAC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAEHNILQDEDFLLDDDFFAEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPL
DIRVNGALLGRGEVVEVNGRYGVRLLEVEATSLTGAVD

Sequences:

>Translated_118_residues
MAEHNILQDEDFLLDDDFFAEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPL
DIRVNGALLGRGEVVEVNGRYGVRLLEVEATSLTGAVD
>Mature_117_residues
AEHNILQDEDFLLDDDFFAEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLD
IRVNGALLGRGEVVEVNGRYGVRLLEVEATSLTGAVD

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=125, Percent_Identity=33.6, Blast_Score=75, Evalue=8e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12976; Mature: 12845

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHNILQDEDFLLDDDFFAEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGE
CCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCHHHHHHCCCEEEEEEEEEEECCHHH
LAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRYGVRLLEVEATSLTGAVD
HHHCCCCCEEEEHHHHCCCEEEEECCEEECCCCEEEECCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure 
AEHNILQDEDFLLDDDFFAEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGE
CCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCHHHHHHCCCEEEEEEEEEEECCHHH
LAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRYGVRLLEVEATSLTGAVD
HHHCCCCCEEEEHHHHCCCEEEEECCEEECCCCEEEECCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]