Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623761
Identifier: 167623761
GI number: 167623761
Start: 2188151
End: 2189026
Strand: Direct
Name: 167623761
Synonym: Shal_1831
Alternate gene names: NA
Gene position: 2188151-2189026 (Clockwise)
Preceding gene: 167623760
Following gene: 167623762
Centisome position: 41.86
GC content: 45.21
Gene sequence:
>876_bases ATGCGCTTAGCCTGCGATCCCGATAATGAAATAACGATTAAGTTGCCCCATATCACGTTAGCGGCACGATTATGGGGGGC GCAAGACAAGCCCGTGATTCTTGCATTACATGGTTGGTTAGATAACGCTAATAGCTTTGAGCCATTGAGCCAATATTTAA CCGATTATCAAATCTTAGCGGTAGATTGGCCTGGGCATGGTGCATCGCAGCATCGCCCTGGTGCCTATCCTCTGCATTGG GTAGACTATCTCTATGATTTAGATGCTCTGCTTGAAGCACTGCCTATTGAGCAAAAGCCCCATGCTATTTTAGGTCATTC ATTGGGCGGTATTATCGCCTCGGCTTATACCGCAGCATTTCCTGATAAAGTCAGTAATTTGTTGTTGATTGAAGCGCTCT CGCCGCTGTATGAGGGTGAGTCAAAATCAAAAAAACGCCTACAAAATAGCTTTTCAGATCACAGGCGTTATCTCTCAAAC TTGGCAAAGCCTGTAAAGTTCCATCGGGATATTGCCCTAGCAGCTTATGCACGGCACAAATTAACGGCACTAGACCTGCA ATGGTGCGAATTATTGACTCAGCGCAATATGCAAAACCTTGATTCTGGGGTATGCTGGCGCAGTGATCCTCGCTTAAAAT TAGATTCCCCTTTAAGACTGACTTATTCTCAAGTCGATGCCTTAATGCAAGCCCATAAAGTCAATACTCTATTAATTTCT GGTAGCCGAGGTTTCCCCCAGTTACGAGAAGCGATCCCAATGGCGAATCGCTGGTTTGACCAATTACAAACAATAGAGCT TGAGGGCGACCATCACCTTCATATGGGGAATGCTGAAAAGGTGTCTGCAGCGATCCGTGCTTTCTTAAATAGATAA
Upstream 100 bases:
>100_bases CTCCAAGACTTGCCCTTGATGAACAAGATAAACAAAAGTATCTCGCGATAGGTGAAAGCGATAGAATGACGCTGAAATTT ATCAAAAAGTAAGAGTAGAG
Downstream 100 bases:
>100_bases GCAGAAAAAGAGACTAGGTTTTTTGTTTCATTTATGTGATGATAATCAAAATTTAAACGCTCGTATGATTTAATGCGTGC TCAATAAATATAAAGAATAG
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; Hydrolase/Acyltransferase; Alpha/Beta Hydrolase Fold Protein; Beta-Ketoacyl Synthase; Lipase A; Lipase; Polyketide Synthase; Hydrolase Protein; Hydrolase Alpha/Beta Fold Family Protein; Alpha/Beta Hydrolase Family Protein; Alpha/Beta Fold Superfamily Hydrolase; Epoxide Hydrolase; Alpha/Beta Superfamily Hydrolase; Hydrolase Or Acytransferase; Alpha/Beta Fold Hydrolase Family Protein; Alpha/Beta Hydrolase Fold Family; Lipase LipA
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MRLACDPDNEITIKLPHITLAARLWGAQDKPVILALHGWLDNANSFEPLSQYLTDYQILAVDWPGHGASQHRPGAYPLHW VDYLYDLDALLEALPIEQKPHAILGHSLGGIIASAYTAAFPDKVSNLLLIEALSPLYEGESKSKKRLQNSFSDHRRYLSN LAKPVKFHRDIALAAYARHKLTALDLQWCELLTQRNMQNLDSGVCWRSDPRLKLDSPLRLTYSQVDALMQAHKVNTLLIS GSRGFPQLREAIPMANRWFDQLQTIELEGDHHLHMGNAEKVSAAIRAFLNR
Sequences:
>Translated_291_residues MRLACDPDNEITIKLPHITLAARLWGAQDKPVILALHGWLDNANSFEPLSQYLTDYQILAVDWPGHGASQHRPGAYPLHW VDYLYDLDALLEALPIEQKPHAILGHSLGGIIASAYTAAFPDKVSNLLLIEALSPLYEGESKSKKRLQNSFSDHRRYLSN LAKPVKFHRDIALAAYARHKLTALDLQWCELLTQRNMQNLDSGVCWRSDPRLKLDSPLRLTYSQVDALMQAHKVNTLLIS GSRGFPQLREAIPMANRWFDQLQTIELEGDHHLHMGNAEKVSAAIRAFLNR >Mature_291_residues MRLACDPDNEITIKLPHITLAARLWGAQDKPVILALHGWLDNANSFEPLSQYLTDYQILAVDWPGHGASQHRPGAYPLHW VDYLYDLDALLEALPIEQKPHAILGHSLGGIIASAYTAAFPDKVSNLLLIEALSPLYEGESKSKKRLQNSFSDHRRYLSN LAKPVKFHRDIALAAYARHKLTALDLQWCELLTQRNMQNLDSGVCWRSDPRLKLDSPLRLTYSQVDALMQAHKVNTLLIS GSRGFPQLREAIPMANRWFDQLQTIELEGDHHLHMGNAEKVSAAIRAFLNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI18777795, Length=305, Percent_Identity=27.5409836065574, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI17137390, Length=308, Percent_Identity=29.5454545454545, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24655874, Length=298, Percent_Identity=28.1879194630872, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24667992, Length=305, Percent_Identity=26.2295081967213, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI21357291, Length=302, Percent_Identity=26.158940397351, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24667999, Length=303, Percent_Identity=25.7425742574257, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24655886, Length=291, Percent_Identity=25.7731958762887, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI21356953, Length=295, Percent_Identity=25.0847457627119, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21356937, Length=294, Percent_Identity=22.4489795918367, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32892; Mature: 32892
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLACDPDNEITIKLPHITLAARLWGAQDKPVILALHGWLDNANSFEPLSQYLTDYQILA CCCCCCCCCCEEEEECCEEEEHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCEEEEE VDWPGHGASQHRPGAYPLHWVDYLYDLDALLEALPIEQKPHAILGHSLGGIIASAYTAAF EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC PDKVSNLLLIEALSPLYEGESKSKKRLQNSFSDHRRYLSNLAKPVKFHRDIALAAYARHK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTALDLQWCELLTQRNMQNLDSGVCWRSDPRLKLDSPLRLTYSQVDALMQAHKVNTLLIS HHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEE GSRGFPQLREAIPMANRWFDQLQTIELEGDHHLHMGNAEKVSAAIRAFLNR CCCCCHHHHHHCCHHHHHHHHHEEEEECCCCEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure MRLACDPDNEITIKLPHITLAARLWGAQDKPVILALHGWLDNANSFEPLSQYLTDYQILA CCCCCCCCCCEEEEECCEEEEHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCEEEEE VDWPGHGASQHRPGAYPLHWVDYLYDLDALLEALPIEQKPHAILGHSLGGIIASAYTAAF EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC PDKVSNLLLIEALSPLYEGESKSKKRLQNSFSDHRRYLSNLAKPVKFHRDIALAAYARHK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTALDLQWCELLTQRNMQNLDSGVCWRSDPRLKLDSPLRLTYSQVDALMQAHKVNTLLIS HHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEE GSRGFPQLREAIPMANRWFDQLQTIELEGDHHLHMGNAEKVSAAIRAFLNR CCCCCHHHHHHCCHHHHHHHHHEEEEECCCCEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA