Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623721

Identifier: 167623721

GI number: 167623721

Start: 2142667

End: 2143704

Strand: Direct

Name: 167623721

Synonym: Shal_1791

Alternate gene names: NA

Gene position: 2142667-2143704 (Clockwise)

Preceding gene: 167623719

Following gene: 167623722

Centisome position: 40.99

GC content: 37.28

Gene sequence:

>1038_bases
ATGAGTATTCAAAAAAGCTTTAAGGGATTTCACGATAAGATAAAACTTGGATATTCAGACACCGAATATTCTACAGCCAA
GATAAAAGATTCAAGCATTACTGCTGCAGTTAAGGCTGCTTTTAAGGATGAAGGGTACTCTGTAGTAGATGATTTCATTC
AAGGCTCTTTTTCTACTCATACAGCGATTAAAAGTAAAGATGGTGATTTCGATATTGACCGTGCGGTGGTTATCGATTAC
CAAGATTCACCTGATAATCCAATCGAGCCTAAAAAAGTAGTTCTGGACGTTCTCGAAAAGAGAGGCTTCAAAAACGCCAA
GATTAAGAAACCATGCGTGACGGCTGATTATAAAAGTGAAAACCTCCATATTGACTTTCCTATATATAGGAACAATAACG
GGACTCTAGAGCTTGCTGTCGGTAAAGCTAACTCAAATCAAGATAACAGAGAATGGGCGATTTCAGACCCTAAGGGACTT
AGAAGCTGGATCAAAGATAGTTCTACATATGGCAATTCAGCAGAGTTAAAACAACAACAATTCAATAGACTTGTTAGGTA
TGTGAAAAGGTGGCGAGATCATAAGTTTACCGATGATAGTGTAAGATCGAAAGTATATTCAATCGGTTTAACTGTAATGT
TAAAAGCTGATTTCGTCTGGGCTTTAGATGATGATGGTTACCCTGATGATTTAAAGGCACTTAGAGACACAATTTCGAGT
GTGATTAGCACTAATTATTTCAGGTTTATTGGTGTTGACCAGTATAAAGTTCAAGTCATGCTTCCTAAAGCGCCTTATAG
AGACATTTTTGATGGAAGTAGCACCAATACAGGCAGTCAATTACGCAATAAACTTAATAGCTTAAAGAGTAAACTTGATG
AAGCTATTGCAGAAACAGACAATACCAAGAAATGCCAAATTCTGAATAAGTTATTTGGTGATGACTTCGAAATACCTGAT
GATACTAAAGGTGCTAATAATATTAGGAAGGCAGTGTATTCTTCTGCTGGTGCTGTAGGGACATCACAAGGCGCATGA

Upstream 100 bases:

>100_bases
AATATTGTCAATTTCAAATAAAAAAACTTTTAACCCATTGAAAAACAGCTTCATTAACACCACTTAATGAATATACGTTA
ATCATGAATGGGATTGGAAA

Downstream 100 bases:

>100_bases
ATTACGATGAACTTGTAGCGTACCTTAAAACAGCTGGGTATGATGTTTGTACCCACAAACATCTCAACAAAGGATGCATT
AAGGTTGATTTTGATGTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTHTAIKSKDGDFDIDRAVVIDY
QDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSENLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGL
RSWIKDSSTYGNSAELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS
VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETDNTKKCQILNKLFGDDFEIPD
DTKGANNIRKAVYSSAGAVGTSQGA

Sequences:

>Translated_345_residues
MSIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTHTAIKSKDGDFDIDRAVVIDY
QDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSENLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGL
RSWIKDSSTYGNSAELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS
VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETDNTKKCQILNKLFGDDFEIPD
DTKGANNIRKAVYSSAGAVGTSQGA
>Mature_344_residues
SIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTHTAIKSKDGDFDIDRAVVIDYQ
DSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSENLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGLR
SWIKDSSTYGNSAELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISSV
ISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETDNTKKCQILNKLFGDDFEIPDD
TKGANNIRKAVYSSAGAVGTSQGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38720; Mature: 38588

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTH
CCCCHHHHHHHHHEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHH
TAIKSKDGDFDIDRAVVIDYQDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSE
HEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCC
NLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGLRSWIKDSSTYGNSAELKQQQ
CEEEEEEEEECCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCHHHHHHHH
FNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH
VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETD
HHHCCCEEEEECCEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NTKKCQILNKLFGDDFEIPDDTKGANNIRKAVYSSAGAVGTSQGA
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTH
CCCHHHHHHHHHEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHH
TAIKSKDGDFDIDRAVVIDYQDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSE
HEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCC
NLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGLRSWIKDSSTYGNSAELKQQQ
CEEEEEEEEECCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCHHHHHHHH
FNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH
VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETD
HHHCCCEEEEECCEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NTKKCQILNKLFGDDFEIPDDTKGANNIRKAVYSSAGAVGTSQGA
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA