Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623721
Identifier: 167623721
GI number: 167623721
Start: 2142667
End: 2143704
Strand: Direct
Name: 167623721
Synonym: Shal_1791
Alternate gene names: NA
Gene position: 2142667-2143704 (Clockwise)
Preceding gene: 167623719
Following gene: 167623722
Centisome position: 40.99
GC content: 37.28
Gene sequence:
>1038_bases ATGAGTATTCAAAAAAGCTTTAAGGGATTTCACGATAAGATAAAACTTGGATATTCAGACACCGAATATTCTACAGCCAA GATAAAAGATTCAAGCATTACTGCTGCAGTTAAGGCTGCTTTTAAGGATGAAGGGTACTCTGTAGTAGATGATTTCATTC AAGGCTCTTTTTCTACTCATACAGCGATTAAAAGTAAAGATGGTGATTTCGATATTGACCGTGCGGTGGTTATCGATTAC CAAGATTCACCTGATAATCCAATCGAGCCTAAAAAAGTAGTTCTGGACGTTCTCGAAAAGAGAGGCTTCAAAAACGCCAA GATTAAGAAACCATGCGTGACGGCTGATTATAAAAGTGAAAACCTCCATATTGACTTTCCTATATATAGGAACAATAACG GGACTCTAGAGCTTGCTGTCGGTAAAGCTAACTCAAATCAAGATAACAGAGAATGGGCGATTTCAGACCCTAAGGGACTT AGAAGCTGGATCAAAGATAGTTCTACATATGGCAATTCAGCAGAGTTAAAACAACAACAATTCAATAGACTTGTTAGGTA TGTGAAAAGGTGGCGAGATCATAAGTTTACCGATGATAGTGTAAGATCGAAAGTATATTCAATCGGTTTAACTGTAATGT TAAAAGCTGATTTCGTCTGGGCTTTAGATGATGATGGTTACCCTGATGATTTAAAGGCACTTAGAGACACAATTTCGAGT GTGATTAGCACTAATTATTTCAGGTTTATTGGTGTTGACCAGTATAAAGTTCAAGTCATGCTTCCTAAAGCGCCTTATAG AGACATTTTTGATGGAAGTAGCACCAATACAGGCAGTCAATTACGCAATAAACTTAATAGCTTAAAGAGTAAACTTGATG AAGCTATTGCAGAAACAGACAATACCAAGAAATGCCAAATTCTGAATAAGTTATTTGGTGATGACTTCGAAATACCTGAT GATACTAAAGGTGCTAATAATATTAGGAAGGCAGTGTATTCTTCTGCTGGTGCTGTAGGGACATCACAAGGCGCATGA
Upstream 100 bases:
>100_bases AATATTGTCAATTTCAAATAAAAAAACTTTTAACCCATTGAAAAACAGCTTCATTAACACCACTTAATGAATATACGTTA ATCATGAATGGGATTGGAAA
Downstream 100 bases:
>100_bases ATTACGATGAACTTGTAGCGTACCTTAAAACAGCTGGGTATGATGTTTGTACCCACAAACATCTCAACAAAGGATGCATT AAGGTTGATTTTGATGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MSIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTHTAIKSKDGDFDIDRAVVIDY QDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSENLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGL RSWIKDSSTYGNSAELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETDNTKKCQILNKLFGDDFEIPD DTKGANNIRKAVYSSAGAVGTSQGA
Sequences:
>Translated_345_residues MSIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTHTAIKSKDGDFDIDRAVVIDY QDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSENLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGL RSWIKDSSTYGNSAELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETDNTKKCQILNKLFGDDFEIPD DTKGANNIRKAVYSSAGAVGTSQGA >Mature_344_residues SIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTHTAIKSKDGDFDIDRAVVIDYQ DSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSENLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGLR SWIKDSSTYGNSAELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISSV ISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETDNTKKCQILNKLFGDDFEIPDD TKGANNIRKAVYSSAGAVGTSQGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38720; Mature: 38588
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTH CCCCHHHHHHHHHEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHH TAIKSKDGDFDIDRAVVIDYQDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSE HEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCC NLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGLRSWIKDSSTYGNSAELKQQQ CEEEEEEEEECCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCHHHHHHHH FNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS HHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETD HHHCCCEEEEECCEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC NTKKCQILNKLFGDDFEIPDDTKGANNIRKAVYSSAGAVGTSQGA CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SIQKSFKGFHDKIKLGYSDTEYSTAKIKDSSITAAVKAAFKDEGYSVVDDFIQGSFSTH CCCHHHHHHHHHEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHH TAIKSKDGDFDIDRAVVIDYQDSPDNPIEPKKVVLDVLEKRGFKNAKIKKPCVTADYKSE HEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCC NLHIDFPIYRNNNGTLELAVGKANSNQDNREWAISDPKGLRSWIKDSSTYGNSAELKQQQ CEEEEEEEEECCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCHHHHHHHH FNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKALRDTISS HHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH VISTNYFRFIGVDQYKVQVMLPKAPYRDIFDGSSTNTGSQLRNKLNSLKSKLDEAIAETD HHHCCCEEEEECCEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC NTKKCQILNKLFGDDFEIPDDTKGANNIRKAVYSSAGAVGTSQGA CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA