Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623676
Identifier: 167623676
GI number: 167623676
Start: 2096703
End: 2097200
Strand: Direct
Name: 167623676
Synonym: Shal_1745
Alternate gene names: NA
Gene position: 2096703-2097200 (Clockwise)
Preceding gene: 167623675
Following gene: 167623678
Centisome position: 40.11
GC content: 37.95
Gene sequence:
>498_bases ATGAGCTTACCTATAGCAAGGTACCATTTTATTATTAATCCATTAGTAAACAAGGAAGTTAAAGTGAAAGTACCGGATAT TAAGAGAACAGCACCAGATGTACTTAGGGTAACAGCATTTGTATTGGAGAAAAGTGAAGCAAACGAGCCATTTAGTGTTG CTGAAGCGGCGAAAACCGTTCAACTTAATGGTATAAATGATTATCGAATCGCAGAAGTTTTAAGAGCGATCTGCTTAGAG CCTAATGGGCCTAATAGCTTGATAAGTTTAACCACAGTCGATAACCAAAAATCCCACGCTAACCCTGGTTATTGGCAGCT TAATCCGCAGACGTACTATAGCTACCTTTCCTATATATCATTATTACGTTCAGAAGAGGCTATCGAGCTTGCTAAGCTGT CTCTAAAAGCGGCGGAAAAATCTAACCAAAATGCAAAAATATCCATATGGATTGCAATCGTATCAATAATATTAACCGCA GTAGCGATATTGGTATAA
Upstream 100 bases:
>100_bases TTGCGAAATACTACGGCGGCAGAACAAGGAGTATACCTAGAGCAGGTACTAAATATTATTGCGGATAACGAACAAGAGTT GAGTATTGATAATAGTGACG
Downstream 100 bases:
>100_bases TTGATTATGACTAGGAATAACTGACTGATGAGGAGTTTGGTGGTAATCCCCAAGCCCTAAGACAATAGTCTCCCCGTGTA GTAGCTTAGACACCAGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSLPIARYHFIINPLVNKEVKVKVPDIKRTAPDVLRVTAFVLEKSEANEPFSVAEAAKTVQLNGINDYRIAEVLRAICLE PNGPNSLISLTTVDNQKSHANPGYWQLNPQTYYSYLSYISLLRSEEAIELAKLSLKAAEKSNQNAKISIWIAIVSIILTA VAILV
Sequences:
>Translated_165_residues MSLPIARYHFIINPLVNKEVKVKVPDIKRTAPDVLRVTAFVLEKSEANEPFSVAEAAKTVQLNGINDYRIAEVLRAICLE PNGPNSLISLTTVDNQKSHANPGYWQLNPQTYYSYLSYISLLRSEEAIELAKLSLKAAEKSNQNAKISIWIAIVSIILTA VAILV >Mature_164_residues SLPIARYHFIINPLVNKEVKVKVPDIKRTAPDVLRVTAFVLEKSEANEPFSVAEAAKTVQLNGINDYRIAEVLRAICLEP NGPNSLISLTTVDNQKSHANPGYWQLNPQTYYSYLSYISLLRSEEAIELAKLSLKAAEKSNQNAKISIWIAIVSIILTAV AILV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18320; Mature: 18189
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPIARYHFIINPLVNKEVKVKVPDIKRTAPDVLRVTAFVLEKSEANEPFSVAEAAKTV CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEE QLNGINDYRIAEVLRAICLEPNGPNSLISLTTVDNQKSHANPGYWQLNPQTYYSYLSYIS EECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHH LLRSEEAIELAKLSLKAAEKSNQNAKISIWIAIVSIILTAVAILV HHHCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHC >Mature Secondary Structure SLPIARYHFIINPLVNKEVKVKVPDIKRTAPDVLRVTAFVLEKSEANEPFSVAEAAKTV CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEE QLNGINDYRIAEVLRAICLEPNGPNSLISLTTVDNQKSHANPGYWQLNPQTYYSYLSYIS EECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHH LLRSEEAIELAKLSLKAAEKSNQNAKISIWIAIVSIILTAVAILV HHHCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA