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The map label for this gene is clpS

Identifier: 167623651

GI number: 167623651

Start: 2064132

End: 2064440

Strand: Direct

Name: clpS

Synonym: Shal_1720

Alternate gene names: 167623651

Gene position: 2064132-2064440 (Clockwise)

Preceding gene: 167623649

Following gene: 167623652

Centisome position: 39.49

GC content: 35.92

Gene sequence:

>309_bases
ATGAGTAGAACAGAAAACATTGAACAGATAGAAGAGAGTGTTGAAGCAGAATTTAAACAGCCTTCTATGTATAAAGTTAT
TTTAAACAATGATGATTACACACCGATGGACTTTGTCATTGAGATTTTACAACTGTTTTTTAAGAAAGATGAGCAGCAAG
CAACGGAAATCATGTTAGCAATTCACCACAAAGGAAAAGGGATCTGCGGAATTTACCCCTTTGGAATTGCAGAAACTAAG
GTTGCGCAAGTAAATCAATTTGCAAGACAAAACCAACATCCGTTACTGTGTTCATTAGAGGAAGCCTAA

Upstream 100 bases:

>100_bases
CAAGTCGTACCTGAGTATAATTTGATAGAATTTGTTCAACAAACAGACTGAGTTACATAATCAATTGGTACAAGCCAAGA
CTAGAGGCTAATATTGGGAT

Downstream 100 bases:

>100_bases
TTGGGTTCACTCTGTTGTTAATTTTTAGGGGGTGCTTATGCTAAATAAAGATCTTGAAGTCACCTTAAACCTGGCTTTTC
AACAAGCCAGAGATGCACGT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MSRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLAIHHKGKGICGIYPFGIAETK
VAQVNQFARQNQHPLLCSLEEA

Sequences:

>Translated_102_residues
MSRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLAIHHKGKGICGIYPFGIAETK
VAQVNQFARQNQHPLLCSLEEA
>Mature_101_residues
SRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLAIHHKGKGICGIYPFGIAETKV
AQVNQFARQNQHPLLCSLEEA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=92, Percent_Identity=61.9565217391304, Blast_Score=130, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_SHEHH (B0TQ07)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001673945.1
- ProteinModelPortal:   B0TQ07
- SMR:   B0TQ07
- GeneID:   5902603
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_1720
- HOGENOM:   HBG644923
- OMA:   VFPFGIA
- ProtClustDB:   CLSK906806
- BioCyc:   SHAL458817:SHAL_1720-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11763; Mature: 11631

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLA
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
IHHKGKGICGIYPFGIAETKVAQVNQFARQNQHPLLCSLEEA
HCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
>Mature Secondary Structure 
SRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLA
CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
IHHKGKGICGIYPFGIAETKVAQVNQFARQNQHPLLCSLEEA
HCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA