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The map label for this gene is secD [H]

Identifier: 167623487

GI number: 167623487

Start: 1876253

End: 1878103

Strand: Direct

Name: secD [H]

Synonym: Shal_1556

Alternate gene names: 167623487

Gene position: 1876253-1878103 (Clockwise)

Preceding gene: 167623486

Following gene: 167623488

Centisome position: 35.9

GC content: 46.03

Gene sequence:

>1851_bases
GTGTTAAATAAATACCCGATGTGGAAAAACCTAATGGTGATAGTCATTATCGCCATAGGTGGATTCTATGCGATACCAAA
CCTTTTCGGAGAAGACCACGCAGTTCAAGTGGTTGCGACTCGAGGAGCAGAGGTCTCAGCGTCGACTCTGTCGACAGTAA
ATGAAGTATTAAAGAGCAAAGGTATCGCTGTTAAGCGTTCCGAGCTTGAAAATGGTCAGTTGTTAGTACGCTTAAACAAT
GGTGAAGAGCAATTAGTTGCTAAAGAAATCATTAGCGATGCGTTAGGCGACAAGTACACCGTAGCATTGAACTTAGCACC
AGCCACACCAGAGTGGTTAGAGGCCATGGGCGGTTCGCCTATGAAGCTAGGTTTGGACTTACGTGGTGGTGTTCACTTCT
TGATGGAAGTGGATATGGGCGAAGCGCTTCGAAAGATGAGCGAAGCCAAGGTTGCAGACTTCAGAACTGATTTACGAGCT
GAGAAAATTCGCTACGCGGGTATTCGTAATGGCGCCAAAGGCATCGAGATTAAGTTTCGCGATGCCGAGACTTTAACGAA
AGCAGAAAACTTTCTTAAGTCTCGCAGCAATGACATGGTCTTCGTTGACAAGACTGTAGGCGATGACTATGTCCTTGTTG
CTAATCCAAGTGAAGCTTATTTAAAGCAAGTGAAAGAAGAAGCACTACAGCAAAACATCACCACACTGCGTAACCGTGTA
AACGAGTTAGGTGTGGCGGAGCCTGTTGTGCAGCGTCAAGGTGCTGAACGTATTATTGTTGAGCTACCAGGTGTTCAAGA
TACTGCGCGCGCAAAAGAGATTTTAAGTGCGACAGCATCGATTGAATTCCACATGGTTGACCAAAAAGCCGATGTTCAAG
CTGCGATGAGTGGCCGAGTACCTGCTGGTTCTGAGCTTTATCAGCGCCGCACAGGTGGTCCAGTCGTATTGAAGAAAGCG
GTTATGTTGACCGGTGATCATATTCAAGGTGCGCAGCCAAGTTTCGATGAATATAGCCGTCCTCAAGTATCAATTAACCT
TGATGCTAAAGGTGGTTCAATCTTCTCTAATGTCACTAAAGATAACATCGGTAACCCGATGGCAACGCTATTTATCGAGT
ATAAAGATACCGGTGAAAAGAATGCCGACGGCAGCGTTAAGATGAAGAAGATTGAAGAAGTGATTTCGGTTGCTACCATT
CAAGCGCGTCTTGGTCGTAACTTTGTTATCACAGGTCTTGAGCATGCAGAAGCACAGAACCTAGCGTTATTGCTACGTGC
TGGTGCGCTAATTGCCCCTGTTTATATTGTTGAAGAACGTACCATTGGTCCAAGCCTAGGTCAGGAAAATATCGAAAACG
GTATGCAAGCGATGATCTGGGGTATGGCTGTTGTCTTAATCTTCATGTTGGTTTACTACCGTGGTTTCGGCCTAATCGCA
AACCTTGCGCTAACCGCTAACTTAGTGATGGTTGTGGGCGTGATGTCTATGATCCCAGGAGCTGTGCTAACTCTGCCAGG
TATTGCCGGTATGGTGTTAACAGTCGGTATGGCGGTTGATGGTAACGTGCTGATTTACGAGCGTATTCGTGAAGAACTGC
GTAATGGTCGTAGCGTACAGCAAGCGATTCATGAAGGATACGGTAACGCATTCTCAACTATCGCCGATGCGAACATCACT
ACCTTTATGACAGCGCTTATCTTATTTGCTGTGGGTACAGGTGCAGTGAAAGGCTTCGCGGTAACCCTAATGATCGGTAT
CGCCACTTCTATGTTTACTTGTATCGTAGGTACTCGTTCAATCGTGAACGCGATCTGGGGTGGTAAACGCGTGAAGAAAC
TGTCTATTTAA

Upstream 100 bases:

>100_bases
CCATCAACGAGACTAGCGAAATCACGATTAAGAAGGATTATATCGCGGCCGTATTGCCAAAAGGCTCTATTAAGTCACTT
TAAGCCAAGAGGGCGATGGC

Downstream 100 bases:

>100_bases
GGGGAAGTTGATAATGTTACAGATTTTAAATGTTAAAGGCACAGTCAACTTCCTGCGCCATGCACTGCCAATCAGCATAT
TCTCTGCTGTATTAGTGCTA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGAEVSASTLSTVNEVLKSKGIAVKRSELENGQLLVRLNN
GEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRA
EKIRYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMSGRVPAGSELYQRRTGGPVVLKKA
VMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATI
QARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYRGFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT
TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI

Sequences:

>Translated_616_residues
MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGAEVSASTLSTVNEVLKSKGIAVKRSELENGQLLVRLNN
GEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRA
EKIRYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMSGRVPAGSELYQRRTGGPVVLKKA
VMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATI
QARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYRGFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT
TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI
>Mature_616_residues
MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGAEVSASTLSTVNEVLKSKGIAVKRSELENGQLLVRLNN
GEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRA
EKIRYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMSGRVPAGSELYQRRTGGPVVLKKA
VMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATI
QARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYRGFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT
TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=58.8996763754045, Blast_Score=727, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66653; Mature: 66653

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGAEVSASTLSTVNEVLKSK
CCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
GIAVKRSELENGQLLVRLNNGEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMGGSP
CCEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRAEKIRYAGIRNGAKGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
DAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLRNRV
CHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMSGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEEECCCHHHHHHHCCCC
PAGSELYQRRTGGPVVLKKAVMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIFSNVTK
CCCHHHHHHCCCCCCEEEHHHHEECCCCCCCCCCCHHCCCCEEEEEEECCCCCHHHCCCC
DNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQN
CCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
LALLLRAGALIAPVYIVEERTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYRGFGLIA
HHHHHHCCHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHCCHHHH
QAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKKLSI
HHHHHHCCCCEEECCC
>Mature Secondary Structure
MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGAEVSASTLSTVNEVLKSK
CCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
GIAVKRSELENGQLLVRLNNGEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMGGSP
CCEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRAEKIRYAGIRNGAKGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
DAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLRNRV
CHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMSGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEEECCCHHHHHHHCCCC
PAGSELYQRRTGGPVVLKKAVMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIFSNVTK
CCCHHHHHHCCCCCCEEEHHHHEECCCCCCCCCCCHHCCCCEEEEEEECCCCCHHHCCCC
DNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQN
CCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
LALLLRAGALIAPVYIVEERTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYRGFGLIA
HHHHHHCCHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHCCHHHH
QAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKKLSI
HHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]