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The map label for this gene is ycdX [C]

Identifier: 167623450

GI number: 167623450

Start: 1832276

End: 1833025

Strand: Direct

Name: ycdX [C]

Synonym: Shal_1519

Alternate gene names: 167623450

Gene position: 1832276-1833025 (Clockwise)

Preceding gene: 167623449

Following gene: 167623451

Centisome position: 35.05

GC content: 44.53

Gene sequence:

>750_bases
ATGAAATATCTTGTTGATACCCATACCCATACGATAGCTTCAACTCATGCTTATAGTACGTTACAAGAATATATTGCGAT
GGCTAAACACAAAGGAATAAAGCTATTTGCCACCACAGATCATGGTCCCGATATGGCGGATGCGCCGCATTTTTGGCACT
TTGTTAATTTGCGTGTATTGCCGCGAGTGGTCGATGGCGTCGGTATATTGAGAGGTATCGAAGCTAATATTAAAAATGTG
GTCGGAGAGATAGATTTTTTTGGCGATTATTTACAAGATCTAGACATTGTTTTAGCCGGATTTCATGAGCCTGTATTTGC
CCCAAGCAATAAAGAAACCCATACAGCAGCGATGATTAACTGTATCAACAGTGGTCATGTCGACATTATCACTCATCCCG
GTAACCCTGCGTACCCGATAGATATTGAGGCCGTAGCCAAAGCCGCCGCCGAGAATAATGTCGCCCTTGAAATCAATAAC
TCTTCATTTTTAGTCTCTCGAAAAGGCAGTGAGCATAATTGCTTAGCCATTGCTAAGGCGGTAAAAGAGGCGGGCGGGCT
ATTGGTGATGGGGTCTGACTCACATGTGGCCTATAGCCTAGGAGACTTTACGCTGGCAGAACAGATTGTTGAGCAAGCCG
ATTTCCCTATCGAGCGCCTACTTAATCGTAGTCCAGAGGCTTTACTCGCATTTTTGTCTGCAAGAGGTCATGCTTCCCTT
GATGAATACTCTGTGCTGCTCGAAAGCTAA

Upstream 100 bases:

>100_bases
TTCTTATACTGATTGGAATTAATAGAGCTATGTTGATGAAAAGAGTAGACTAACGGTCTACTCTTTTTTTGTTTGAAACT
TTTGTAATGAAGAGACTGCC

Downstream 100 bases:

>100_bases
AACGAAAGCTAAAACTAGAAGAGATAATTAAAGCAAGATGCGAGTTCTTATCACCGGCGCAGCGGGTCAGCTGGGGCAGG
CATTACTGTCGATAGCAGAG

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVLPRVVDGVGILRGIEANIKNV
VGEIDFFGDYLQDLDIVLAGFHEPVFAPSNKETHTAAMINCINSGHVDIITHPGNPAYPIDIEAVAKAAAENNVALEINN
SSFLVSRKGSEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTLAEQIVEQADFPIERLLNRSPEALLAFLSARGHASL
DEYSVLLES

Sequences:

>Translated_249_residues
MKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVLPRVVDGVGILRGIEANIKNV
VGEIDFFGDYLQDLDIVLAGFHEPVFAPSNKETHTAAMINCINSGHVDIITHPGNPAYPIDIEAVAKAAAENNVALEINN
SSFLVSRKGSEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTLAEQIVEQADFPIERLLNRSPEALLAFLSARGHASL
DEYSVLLES
>Mature_249_residues
MKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVLPRVVDGVGILRGIEANIKNV
VGEIDFFGDYLQDLDIVLAGFHEPVFAPSNKETHTAAMINCINSGHVDIITHPGNPAYPIDIEAVAKAAAENNVALEINN
SSFLVSRKGSEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTLAEQIVEQADFPIERLLNRSPEALLAFLSARGHASL
DEYSVLLES

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=244, Percent_Identity=64.7540983606557, Blast_Score=314, Evalue=3e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 27069; Mature: 27069

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEHHHHH
PRVVDGVGILRGIEANIKNVVGEIDFFGDYLQDLDIVLAGFHEPVFAPSNKETHTAAMIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
CINSGHVDIITHPGNPAYPIDIEAVAKAAAENNVALEINNSSFLVSRKGSEHNCLAIAKA
HHCCCCEEEEECCCCCCCCEEHHHHHHHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHH
VKEAGGLLVMGSDSHVAYSLGDFTLAEQIVEQADFPIERLLNRSPEALLAFLSARGHASL
HHHHCCEEEEECCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCCH
DEYSVLLES
HHHHHEECC
>Mature Secondary Structure
MKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEHHHHH
PRVVDGVGILRGIEANIKNVVGEIDFFGDYLQDLDIVLAGFHEPVFAPSNKETHTAAMIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
CINSGHVDIITHPGNPAYPIDIEAVAKAAAENNVALEINNSSFLVSRKGSEHNCLAIAKA
HHCCCCEEEEECCCCCCCCEEHHHHHHHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHH
VKEAGGLLVMGSDSHVAYSLGDFTLAEQIVEQADFPIERLLNRSPEALLAFLSARGHASL
HHHHCCEEEEECCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCCH
DEYSVLLES
HHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA