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The map label for this gene is kpsD [H]

Identifier: 167623414

GI number: 167623414

Start: 1783501

End: 1786275

Strand: Direct

Name: kpsD [H]

Synonym: Shal_1483

Alternate gene names: 167623414

Gene position: 1783501-1786275 (Clockwise)

Preceding gene: 167623413

Following gene: 167623415

Centisome position: 34.12

GC content: 44.97

Gene sequence:

>2775_bases
GTGCTTAACAAGACTAAAAAACTCATCATTGCTGGTATGTCAGCGCTGATATTGCTATCAGGGCAGGCGAGTGCTATCAC
GCCTTCGCCACAAATGATGGAGCAATTTAAAAATCTTCCAGCATCTGAGCAGCAACGCTTAGCAAAGCAGTATGGCATAG
ACCCTTCAATGCTTGGCGGTAGCAGTAGCTCACAGCCGCAACTTGAAAATCCAAACTTAGTTAATCCACGTGCTCAGTAC
GATGAGAATGGTGTATTAATTCAAGTCGATCAATTTGGCAAGCCACTAAAAGATAAGTCAGACGATCAACTGAAGTTTGA
AGAAGATGCAGCTAAAAAAGAGCTAAAGCGCTTTGGTTACGACCTGTTTGCTGGTGAGCCAACAACATTCGCGCCAGTAT
CTGATGTCCCCGTGCCAAGTGAATACTTAGTTGGCCCTGGTGACAACATCAAGGTACAGCTTTTCGGTAAAGATAATAAT
GAGTATGATCTTGTCATTAACCGTGAAGGCGTTATCCAATTCCCAGACCTGGGACCAATCTCTGTTTCTGGCTTAACCTT
TAGCGAATTGCGTGAAACTCTGTCTGAGCGTATCAATCAGCAGATGATCGGTATTCAGTCAAACATCACCATGGGCGAGT
TACGCTCGATTCGTATTTTCGTTGCTGGTGACGCCTATAAACCCGGCTCTTACACGGTATCAAGTCTTTCAACCATTACA
CAGGCATTGTTTGTGGCTGGTGGCGTCAACGAAATCGGCTCGCTACGTAATATTCAAGTAAAGCGCAACGGCAAGCTTGT
AGGCAGTATGGATCTCTATGATCTGCTACTTCGCGGTGATGCATCGGGCGATATTAACTTACGTTCTGGTGATGTGGTAT
TCATCCCTTCTGTGGGTGGCCTAGCCAGCGTGACTGGTGAAGTTCGTCGTCCTGCTATTTACGAGCTGAAAAAGCACGAA
ACCATGGCGCAAGTTATCGAGATGGCTGCAGGAATTAAGCCTGGTGCCTATCCGAGACGCAGCAGCGTTGAGCGATTTAA
TGCAAACAGCCTTAAAACTATCTTAAATGTGGATTTAACCACTCAAGCTGGTAAAGCGACAAAAGTGGTTGCTGGTGACG
TAATCCGTGTTAAAAGTGCAACAACACAATATGAAGATGCCATTACGGTTGTCGGCGCAGTAGTTCGCCCTGGCAAGTAT
CAATGGTATCAAGGCCAAAAAATCAGTGATTTAGTGCCATCTATCTGGGGCGACTTGAATGTCTCGGTTGACCTTGAATA
CGCCATCATCGTACGTGAAATCAATAAGCAAGGTGATATTCAGGTTTATCAATTTTCACCAGTAAAAGCGATTAACGGCA
AAGAGCCTTCACAAGACTTAACGCTACAGGCGCGTGATAAAGTCATCTTCTTTAACTTTAGTGACTTAACTCAAAACCGC
TACGAGCTAAACAAACTGGTAAAAGAGCGCGTGCAAAAGGTTCAATCACTCGCTGGCAACTCATTAATTGGTAATGATTT
ATTTGAAGCTGGCTTCTCACAGCTAAATCAGAAGAAGTTTGCTGACCGCTCTGAACTCGGTGGGGTTGCCATTAATAGCA
AAGTCCAAGACCAAGATCCAACGGCCAAAGCGATAAAAGGTGAAGTCAACAAGATGTTGGTTAACCTTTTCGACGACAGT
GACTTAATTAAGCTCAGTGGCGCGATGAACCGCGGTGAGCTACTTTATCCAGTCGTTATGAAGCTAAATAGTCAAGGGCG
TGCGGGTAACGGTGTTCAGGCTGTAGCGATTAACGGGCGAGTGAACAACCCTGGTATTTATCCATTGTCTGTCAATGCTC
GTATTAAAGATTTAGTCATGGCTGCTGGTGGTCTTGAAGAGGGCGCATATACGCCGCGCGCAGAATTAACCAGTACTTAC
GTGACCGTTGATGGATCAGCTATCAAGCATACCAATATTGCACTTGAAGCGGCGCTTCAAGGTGATGCAACCCAAAATAT
CGCCTTAAAGGGCCGTGATATTTTAACGGTAATGACAACGCCTGATTGGCAAGAAAATAAGTCAGTAGAAATTCGTGGTG
AAGTTAAATTCCCTGGTACCTACAATATTCGCCGTGGTGAAACCTTAGCTGATGTATTAAAACGTGCTGGCGGCTTTACC
GAGTATGCTTACTTGCCGTCATCAGTATTTGTGCGTGAATCTGTACGTCAGCAAGAACAGTTAGAAGTTAAAAAGTTAGC
AGAACAGCTCCTGCGCGATGTTGCTACTCGTGGTGTATCAAAAGACGGTAATGTAATTAACTACAGTGATGCACAAATGA
TGCTAGCTGACTTGGAAACAATCCAAGCGGTTGGTCGTTTAGTTGTCGATGTATCAGCAATCTCAGTGGGTATTAAGCAA
GCCGATATTCAGTTAGAAGATGAAGATGTGCTTTACGTGCCATCAACTAAGCAAACGATTGCGGTTATGGGTGAAGTACA
GCACGCAGCGACACATAGATTCAAGGAAGGTCAAACGATTGATCAATACTTGGCAATGTCAGGTGGCGCACGAGAGCGCG
CAGACGATGACCGAACCTATGTTATTAAGGCTGACGGCTCAGTCCTGATACCAAGTAAATCCATGTGGTTTAGTAATGAG
TCAAGCTTACAACCAGGCGACACCATCATTGTACCGCTCGACACCGAGTACAAAGACAACTTAACGCTTTGGACGCAAGT
AACAAGCATCATCTACAACACAGCAGTCGCATTCGCCACAGTCGCAAATCTTTAA

Upstream 100 bases:

>100_bases
TCGTCTCAGCTTTAAGATTTTGCTTTTCCTAGAACCTAGCGCCTCGAAGCGTAGCGTCCTAGGACCTTTTCTGATTTTAA
CCCTCTCTCGGAGATTACTG

Downstream 100 bases:

>100_bases
AAAGAAGGTTTGAGGAAAAGCAGGTCCTAGGCCCTAAAACCTAAGTTCTAAAAGCTAGGTTCTAAAAGCTAGGGCCAAAA
CCTAATAGCCAAGGATGGTG

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 924; Mature: 924

Protein sequence:

>924_residues
MLNKTKKLIIAGMSALILLSGQASAITPSPQMMEQFKNLPASEQQRLAKQYGIDPSMLGGSSSSQPQLENPNLVNPRAQY
DENGVLIQVDQFGKPLKDKSDDQLKFEEDAAKKELKRFGYDLFAGEPTTFAPVSDVPVPSEYLVGPGDNIKVQLFGKDNN
EYDLVINREGVIQFPDLGPISVSGLTFSELRETLSERINQQMIGIQSNITMGELRSIRIFVAGDAYKPGSYTVSSLSTIT
QALFVAGGVNEIGSLRNIQVKRNGKLVGSMDLYDLLLRGDASGDINLRSGDVVFIPSVGGLASVTGEVRRPAIYELKKHE
TMAQVIEMAAGIKPGAYPRRSSVERFNANSLKTILNVDLTTQAGKATKVVAGDVIRVKSATTQYEDAITVVGAVVRPGKY
QWYQGQKISDLVPSIWGDLNVSVDLEYAIIVREINKQGDIQVYQFSPVKAINGKEPSQDLTLQARDKVIFFNFSDLTQNR
YELNKLVKERVQKVQSLAGNSLIGNDLFEAGFSQLNQKKFADRSELGGVAINSKVQDQDPTAKAIKGEVNKMLVNLFDDS
DLIKLSGAMNRGELLYPVVMKLNSQGRAGNGVQAVAINGRVNNPGIYPLSVNARIKDLVMAAGGLEEGAYTPRAELTSTY
VTVDGSAIKHTNIALEAALQGDATQNIALKGRDILTVMTTPDWQENKSVEIRGEVKFPGTYNIRRGETLADVLKRAGGFT
EYAYLPSSVFVRESVRQQEQLEVKKLAEQLLRDVATRGVSKDGNVINYSDAQMMLADLETIQAVGRLVVDVSAISVGIKQ
ADIQLEDEDVLYVPSTKQTIAVMGEVQHAATHRFKEGQTIDQYLAMSGGARERADDDRTYVIKADGSVLIPSKSMWFSNE
SSLQPGDTIIVPLDTEYKDNLTLWTQVTSIIYNTAVAFATVANL

Sequences:

>Translated_924_residues
MLNKTKKLIIAGMSALILLSGQASAITPSPQMMEQFKNLPASEQQRLAKQYGIDPSMLGGSSSSQPQLENPNLVNPRAQY
DENGVLIQVDQFGKPLKDKSDDQLKFEEDAAKKELKRFGYDLFAGEPTTFAPVSDVPVPSEYLVGPGDNIKVQLFGKDNN
EYDLVINREGVIQFPDLGPISVSGLTFSELRETLSERINQQMIGIQSNITMGELRSIRIFVAGDAYKPGSYTVSSLSTIT
QALFVAGGVNEIGSLRNIQVKRNGKLVGSMDLYDLLLRGDASGDINLRSGDVVFIPSVGGLASVTGEVRRPAIYELKKHE
TMAQVIEMAAGIKPGAYPRRSSVERFNANSLKTILNVDLTTQAGKATKVVAGDVIRVKSATTQYEDAITVVGAVVRPGKY
QWYQGQKISDLVPSIWGDLNVSVDLEYAIIVREINKQGDIQVYQFSPVKAINGKEPSQDLTLQARDKVIFFNFSDLTQNR
YELNKLVKERVQKVQSLAGNSLIGNDLFEAGFSQLNQKKFADRSELGGVAINSKVQDQDPTAKAIKGEVNKMLVNLFDDS
DLIKLSGAMNRGELLYPVVMKLNSQGRAGNGVQAVAINGRVNNPGIYPLSVNARIKDLVMAAGGLEEGAYTPRAELTSTY
VTVDGSAIKHTNIALEAALQGDATQNIALKGRDILTVMTTPDWQENKSVEIRGEVKFPGTYNIRRGETLADVLKRAGGFT
EYAYLPSSVFVRESVRQQEQLEVKKLAEQLLRDVATRGVSKDGNVINYSDAQMMLADLETIQAVGRLVVDVSAISVGIKQ
ADIQLEDEDVLYVPSTKQTIAVMGEVQHAATHRFKEGQTIDQYLAMSGGARERADDDRTYVIKADGSVLIPSKSMWFSNE
SSLQPGDTIIVPLDTEYKDNLTLWTQVTSIIYNTAVAFATVANL
>Mature_924_residues
MLNKTKKLIIAGMSALILLSGQASAITPSPQMMEQFKNLPASEQQRLAKQYGIDPSMLGGSSSSQPQLENPNLVNPRAQY
DENGVLIQVDQFGKPLKDKSDDQLKFEEDAAKKELKRFGYDLFAGEPTTFAPVSDVPVPSEYLVGPGDNIKVQLFGKDNN
EYDLVINREGVIQFPDLGPISVSGLTFSELRETLSERINQQMIGIQSNITMGELRSIRIFVAGDAYKPGSYTVSSLSTIT
QALFVAGGVNEIGSLRNIQVKRNGKLVGSMDLYDLLLRGDASGDINLRSGDVVFIPSVGGLASVTGEVRRPAIYELKKHE
TMAQVIEMAAGIKPGAYPRRSSVERFNANSLKTILNVDLTTQAGKATKVVAGDVIRVKSATTQYEDAITVVGAVVRPGKY
QWYQGQKISDLVPSIWGDLNVSVDLEYAIIVREINKQGDIQVYQFSPVKAINGKEPSQDLTLQARDKVIFFNFSDLTQNR
YELNKLVKERVQKVQSLAGNSLIGNDLFEAGFSQLNQKKFADRSELGGVAINSKVQDQDPTAKAIKGEVNKMLVNLFDDS
DLIKLSGAMNRGELLYPVVMKLNSQGRAGNGVQAVAINGRVNNPGIYPLSVNARIKDLVMAAGGLEEGAYTPRAELTSTY
VTVDGSAIKHTNIALEAALQGDATQNIALKGRDILTVMTTPDWQENKSVEIRGEVKFPGTYNIRRGETLADVLKRAGGFT
EYAYLPSSVFVRESVRQQEQLEVKKLAEQLLRDVATRGVSKDGNVINYSDAQMMLADLETIQAVGRLVVDVSAISVGIKQ
ADIQLEDEDVLYVPSTKQTIAVMGEVQHAATHRFKEGQTIDQYLAMSGGARERADDDRTYVIKADGSVLIPSKSMWFSNE
SSLQPGDTIIVPLDTEYKDNLTLWTQVTSIIYNTAVAFATVANL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=206, Percent_Identity=27.1844660194175, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1788376, Length=206, Percent_Identity=23.7864077669903, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 100966; Mature: 100966

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKTKKLIIAGMSALILLSGQASAITPSPQMMEQFKNLPASEQQRLAKQYGIDPSMLGG
CCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCC
SSSSQPQLENPNLVNPRAQYDENGVLIQVDQFGKPLKDKSDDQLKFEEDAAKKELKRFGY
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCCC
DLFAGEPTTFAPVSDVPVPSEYLVGPGDNIKVQLFGKDNNEYDLVINREGVIQFPDLGPI
EEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCEEEEEECCCEEECCCCCCE
SVSGLTFSELRETLSERINQQMIGIQSNITMGELRSIRIFVAGDAYKPGSYTVSSLSTIT
EECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEHHHHHHHH
QALFVAGGVNEIGSLRNIQVKRNGKLVGSMDLYDLLLRGDASGDINLRSGDVVFIPSVGG
HHHHHCCCHHHHCCCEEEEEEECCCEEECCHHHHHHHCCCCCCCEEEECCCEEEEECCCC
LASVTGEVRRPAIYELKKHETMAQVIEMAAGIKPGAYPRRSSVERFNANSLKTILNVDLT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEEEEE
TQAGKATKVVAGDVIRVKSATTQYEDAITVVGAVVRPGKYQWYQGQKISDLVPSIWGDLN
CCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCE
VSVDLEYAIIVREINKQGDIQVYQFSPVKAINGKEPSQDLTLQARDKVIFFNFSDLTQNR
EEEEEEEEEEEEECCCCCCEEEEEECCEEECCCCCCCCCCEEEECCEEEEEECHHHHCHH
YELNKLVKERVQKVQSLAGNSLIGNDLFEAGFSQLNQKKFADRSELGGVAINSKVQDQDP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCCC
TAKAIKGEVNKMLVNLFDDSDLIKLSGAMNRGELLYPVVMKLNSQGRAGNGVQAVAINGR
CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEHEEECCCCCCCCCEEEEEEECC
VNNPGIYPLSVNARIKDLVMAAGGLEEGAYTPRAELTSTYVTVDGSAIKHTNIALEAALQ
CCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHHCCEEEEEECCCEEEECCEEEEEEEC
GDATQNIALKGRDILTVMTTPDWQENKSVEIRGEVKFPGTYNIRRGETLADVLKRAGGFT
CCCCCEEEECCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCE
EYAYLPSSVFVRESVRQQEQLEVKKLAEQLLRDVATRGVSKDGNVINYSDAQMMLADLET
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHH
IQAVGRLVVDVSAISVGIKQADIQLEDEDVLYVPSTKQTIAVMGEVQHAATHRFKEGQTI
HHHHHHHHEEHHHHHCCEEEEEEEECCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCCHH
DQYLAMSGGARERADDDRTYVIKADGSVLIPSKSMWFSNESSLQPGDTIIVPLDTEYKDN
HHHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCEEECCCCCCCCCCEEEEECCCCCCCC
LTLWTQVTSIIYNTAVAFATVANL
EEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNKTKKLIIAGMSALILLSGQASAITPSPQMMEQFKNLPASEQQRLAKQYGIDPSMLGG
CCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCC
SSSSQPQLENPNLVNPRAQYDENGVLIQVDQFGKPLKDKSDDQLKFEEDAAKKELKRFGY
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCCC
DLFAGEPTTFAPVSDVPVPSEYLVGPGDNIKVQLFGKDNNEYDLVINREGVIQFPDLGPI
EEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCEEEEEECCCEEECCCCCCE
SVSGLTFSELRETLSERINQQMIGIQSNITMGELRSIRIFVAGDAYKPGSYTVSSLSTIT
EECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEHHHHHHHH
QALFVAGGVNEIGSLRNIQVKRNGKLVGSMDLYDLLLRGDASGDINLRSGDVVFIPSVGG
HHHHHCCCHHHHCCCEEEEEEECCCEEECCHHHHHHHCCCCCCCEEEECCCEEEEECCCC
LASVTGEVRRPAIYELKKHETMAQVIEMAAGIKPGAYPRRSSVERFNANSLKTILNVDLT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEEEEE
TQAGKATKVVAGDVIRVKSATTQYEDAITVVGAVVRPGKYQWYQGQKISDLVPSIWGDLN
CCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCE
VSVDLEYAIIVREINKQGDIQVYQFSPVKAINGKEPSQDLTLQARDKVIFFNFSDLTQNR
EEEEEEEEEEEEECCCCCCEEEEEECCEEECCCCCCCCCCEEEECCEEEEEECHHHHCHH
YELNKLVKERVQKVQSLAGNSLIGNDLFEAGFSQLNQKKFADRSELGGVAINSKVQDQDP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCCC
TAKAIKGEVNKMLVNLFDDSDLIKLSGAMNRGELLYPVVMKLNSQGRAGNGVQAVAINGR
CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEHEEECCCCCCCCCEEEEEEECC
VNNPGIYPLSVNARIKDLVMAAGGLEEGAYTPRAELTSTYVTVDGSAIKHTNIALEAALQ
CCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHHCCEEEEEECCCEEEECCEEEEEEEC
GDATQNIALKGRDILTVMTTPDWQENKSVEIRGEVKFPGTYNIRRGETLADVLKRAGGFT
CCCCCEEEECCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCE
EYAYLPSSVFVRESVRQQEQLEVKKLAEQLLRDVATRGVSKDGNVINYSDAQMMLADLET
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHH
IQAVGRLVVDVSAISVGIKQADIQLEDEDVLYVPSTKQTIAVMGEVQHAATHRFKEGQTI
HHHHHHHHEEHHHHHCCEEEEEEEECCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCCHH
DQYLAMSGGARERADDDRTYVIKADGSVLIPSKSMWFSNESSLQPGDTIIVPLDTEYKDN
HHHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCEEECCCCCCCCCCEEEEECCCCCCCC
LTLWTQVTSIIYNTAVAFATVANL
EEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]