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The map label for this gene is rfaH [H]

Identifier: 167623413

GI number: 167623413

Start: 1781604

End: 1782140

Strand: Direct

Name: rfaH [H]

Synonym: Shal_1482

Alternate gene names: 167623413

Gene position: 1781604-1782140 (Clockwise)

Preceding gene: 167623411

Following gene: 167623414

Centisome position: 34.09

GC content: 44.32

Gene sequence:

>537_bases
ATGAAGGCTTGGTATCTAATATATTGCAAATCTCGAGGCGAAGCCCGGGCGCAGCAAAACCTGGCACTTCAGCAGATTGA
TACTTACCTGCCTACCTATCCAGAAGAAAAGTTAGTAAAAGGACAAGTAAGCGTGCGGCGTGTATCGCTGTTCCCCAGTT
ACCTATTTATTAATTTTGACCCCGAAGTCACCAGTGTGTCTAAAATCCATAACACCCGCGGCGTTATCAGAATAGTCGGT
TGTAAAGAACTGATGACATCTATCGATGACAGCGTTATCCATGCAATCAAAATGCGTGAACATAAGCTGCTCTCTGAAAT
ATCAAGCCAAAGCGCCGAACCTGCACCTAAGATGGAGCAGGGAGATAAGGTGTGCTTCACAAAAGGTCCATTTGTGGAAC
TTGAAGGGATCTTCGATGAAGCGAATGGTGAGAAGCGATGCTTCGTACTGTTTGAGCTAATGGGTAAGCAGCAACGGGTC
GTCGTTGATAGAGATGTGATTAAGCATGTTAATGAAAAACAATTAGTTGCAAGCTAA

Upstream 100 bases:

>100_bases
GCGACTTCCAATTAAGGCCACAAATTTGTTAGTATTCGTGCCGTGAATGGAAGTCACCGCTTGTTAAGAGCTGTTGTTGA
ATTACAGATGAGAGAATTAA

Downstream 100 bases:

>100_bases
CTTTTTTATAAAACAGTACTCGCTTAGGTCGCTTTAAAATCTAAGGTACGGTAAAACACAGGCTACAGCGTTTTAATCGT
TACAGTGGATCTTGATAAAC

Product: transcriptional acivator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKAWYLIYCKSRGEARAQQNLALQQIDTYLPTYPEEKLVKGQVSVRRVSLFPSYLFINFDPEVTSVSKIHNTRGVIRIVG
CKELMTSIDDSVIHAIKMREHKLLSEISSQSAEPAPKMEQGDKVCFTKGPFVELEGIFDEANGEKRCFVLFELMGKQQRV
VVDRDVIKHVNEKQLVAS

Sequences:

>Translated_178_residues
MKAWYLIYCKSRGEARAQQNLALQQIDTYLPTYPEEKLVKGQVSVRRVSLFPSYLFINFDPEVTSVSKIHNTRGVIRIVG
CKELMTSIDDSVIHAIKMREHKLLSEISSQSAEPAPKMEQGDKVCFTKGPFVELEGIFDEANGEKRCFVLFELMGKQQRV
VVDRDVIKHVNEKQLVAS
>Mature_178_residues
MKAWYLIYCKSRGEARAQQNLALQQIDTYLPTYPEEKLVKGQVSVRRVSLFPSYLFINFDPEVTSVSKIHNTRGVIRIVG
CKELMTSIDDSVIHAIKMREHKLLSEISSQSAEPAPKMEQGDKVCFTKGPFVELEGIFDEANGEKRCFVLFELMGKQQRV
VVDRDVIKHVNEKQLVAS

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=157, Percent_Identity=36.3057324840764, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 20307; Mature: 20307

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWYLIYCKSRGEARAQQNLALQQIDTYLPTYPEEKLVKGQVSVRRVSLFPSYLFINFD
CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHEEEEEECCEEEEEEEC
PEVTSVSKIHNTRGVIRIVGCKELMTSIDDSVIHAIKMREHKLLSEISSQSAEPAPKMEQ
CCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GDKVCFTKGPFVELEGIFDEANGEKRCFVLFELMGKQQRVVVDRDVIKHVNEKQLVAS
CCEEEEECCCEEEEEEEEECCCCCCEEEEEEEHHCCCCEEEECHHHHHCCCCHHHCCC
>Mature Secondary Structure
MKAWYLIYCKSRGEARAQQNLALQQIDTYLPTYPEEKLVKGQVSVRRVSLFPSYLFINFD
CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHEEEEEECCEEEEEEEC
PEVTSVSKIHNTRGVIRIVGCKELMTSIDDSVIHAIKMREHKLLSEISSQSAEPAPKMEQ
CCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GDKVCFTKGPFVELEGIFDEANGEKRCFVLFELMGKQQRVVVDRDVIKHVNEKQLVAS
CCEEEEECCCEEEEEEEEECCCCCCEEEEEEEHHCCCCEEEECHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]