| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622443
Identifier: 167622443
GI number: 167622443
Start: 606401
End: 608467
Strand: Direct
Name: 167622443
Synonym: Shal_0503
Alternate gene names: NA
Gene position: 606401-608467 (Clockwise)
Preceding gene: 167622441
Following gene: 167622445
Centisome position: 11.6
GC content: 47.65
Gene sequence:
>2067_bases ATGAGAAAATTTAATAAATGTAGTGTGGCATTAATTGTCGCCACCGCTTTCGGTCTAGCAGCCTGTAGTGACGGTAAAGA TGGTAGTGATGATGAAGATGGCATCAGCCCGCTGCCACCCGTCGTCGACGCGACAGAGATCACCAATGTTGAAGTGCTGA GCCACACCCTAGAAGAGGGCGTGGTGCGTTTTGAGTTTGAAGTCACTAACGAGGAGGGGCTGCTTGTCAGTGGCCTCGAA AAAGTGAGCGCTGAGGTTGCGGAGCTGACAGATAAAGGCATCGCACGCAGCCGTCCTGATTTCGAAGGCACCATTGCTGG TGGTAATGCTAATGAGGAGACTGAAGGGGCAAGTCTCAACATGACTGAAAATGGTCGTTATGAATTTTTAGCACCCATGC CAGCAGTCAATGCAGGGACAGAGGGGATCATTCGACTCGCAGTCGGAGGCGGTGAGAATATCGCCAAGTCAAACTATATT GTCGTTGATAAGACGGAAAGCCTACACACCACTTCAACGGCGACTTGTCATGGTTGTCACGTCGATTATGCGGCGTCTAA ATTAAAGCATCCAAGCTACACGGCCATTAATACCGATGGCGAAACCGATCTGGTCGCAGGCTGTATGGTTTGTCATGGTA ATGTGGTGCGTGATAAAGGCGGTTATGCAAAAAATACAATGCAGAAGATTGGTCATATCAATCATCAGAAGTTTGAAAAA GACTTTGAGCCTGCTAATTGCTACACCTGTCATGCAGAGCCTATCACCAAGGTAAATAGCATGGATACCTGTACCGACTG TCATGATGCTGCAGGCGTTGGTACGACTTCGGTTGCGATGACCTACAGTAGCTTCGACGAGACCGATGACGTGCGTCAAT TCCATAAGAAAGTGGGTGAAAGAGCCGACATTAGAGCGCAGCATTACACGACGACATCAGCCCCATACACCAATAGCAGT TTGGAGTGGGATGACCATGAAACAACCGGAGGCTGGTGTACTGATATCGCACTGTTTAATACCGATTCAGGAACAGACGT ACAGCTTAATATTGCACAGTTATATGCAGCAGGCACGTTAACCTATGCGGGAGCCTATATTCACGCCTATGACAATGATT CAATAGTCGGTCGCCCAAGCCCACGAGATTCTGGTGGCGTAACAAATAGCCAGTATATTGAAAATCCTGATGGCTCTAGA GCGGCGTGTTACGTGCGCTTAGATGGTATTGATGCAGGCTTCGCTAATGCAGGCTTTACCGCAAGCTCGAGAGTGACCTT CAAGCAGCAAGATGACGATGGCGGCTATGATGGTGTTTCACTGACGAGTTACTCGGACGTTGTTGATAGAAATGAGGAAA AACTGCAAGAGTATAACCGTCGCCACAGCGTCACACTTGATAGCTGTACCACTTGTCATAACAACGAGACTAACTATCAC AAGAATGGTAGCTATAGTGATGGTGGTTTAGATTGTGTGGCTTGTCATAACAATGGTCAAGATCGCGCAGGACAGCGAGT CGTTGCAATGGATGCATTTGAAACCGATAGCTTCCGCATTAATGCTGGCTACACCATTGCAGTAAAGAATAGCGATGGAG AACAAACGGGTTGGAAAGCGAATAGTGCGCCAGGCTTTGGTCCGTTAGTGCATGCACAACACTGGGGATTGCAGTCTGTT ATTGGCTCTGAAATTAGCCGAGATAATGAGGTTGCGCTAACAAACTCAGCGGCAAAGCTGAATGCCGATAACTGCGTGGC TTGTCATGCCGATGGTATCGATCTTAACGCTGTACCAAACCAGTATATGCTTTCTAGAGCCTTCAATGGTGGAAATGCCG GAGAGTCTGGTGTTGCCTCAAGTCCTATTACCGCAAACTGTTTTGCCTGTCATAATAATGACCAAGCGCTGAACCATATG ATCTCAAACGGTGGTGAGCTTAACCTTGAAGTAAACAAAGCGGGTGATTGGTTTACCCAAGGCACATCTGAGTCTTGTGC AACGTGTCATGCAGAGGGGCGCTCATACGGAATTGAGAAGTATCACGTGTTTGACCGTAAAGAATAA
Upstream 100 bases:
>100_bases TAATTGTTGGGGAATTTGTCACAAAAATGAGCCGTTACTACTAATAAGGTATTTACGGGGGAGTAAAAGGTCACGACTTA ATAAAAATTATGGAGTGATG
Downstream 100 bases:
>100_bases AAAGTAAGGGCTAGCTTCTCCCTGCAAATAGTTAGCCCATGACTTTTTGAGGCGCGATTTAACCTCTATTCGAGATAGTT TTCTGCTGATTTTGAATAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 688; Mature: 688
Protein sequence:
>688_residues MRKFNKCSVALIVATAFGLAACSDGKDGSDDEDGISPLPPVVDATEITNVEVLSHTLEEGVVRFEFEVTNEEGLLVSGLE KVSAEVAELTDKGIARSRPDFEGTIAGGNANEETEGASLNMTENGRYEFLAPMPAVNAGTEGIIRLAVGGGENIAKSNYI VVDKTESLHTTSTATCHGCHVDYAASKLKHPSYTAINTDGETDLVAGCMVCHGNVVRDKGGYAKNTMQKIGHINHQKFEK DFEPANCYTCHAEPITKVNSMDTCTDCHDAAGVGTTSVAMTYSSFDETDDVRQFHKKVGERADIRAQHYTTTSAPYTNSS LEWDDHETTGGWCTDIALFNTDSGTDVQLNIAQLYAAGTLTYAGAYIHAYDNDSIVGRPSPRDSGGVTNSQYIENPDGSR AACYVRLDGIDAGFANAGFTASSRVTFKQQDDDGGYDGVSLTSYSDVVDRNEEKLQEYNRRHSVTLDSCTTCHNNETNYH KNGSYSDGGLDCVACHNNGQDRAGQRVVAMDAFETDSFRINAGYTIAVKNSDGEQTGWKANSAPGFGPLVHAQHWGLQSV IGSEISRDNEVALTNSAAKLNADNCVACHADGIDLNAVPNQYMLSRAFNGGNAGESGVASSPITANCFACHNNDQALNHM ISNGGELNLEVNKAGDWFTQGTSESCATCHAEGRSYGIEKYHVFDRKE
Sequences:
>Translated_688_residues MRKFNKCSVALIVATAFGLAACSDGKDGSDDEDGISPLPPVVDATEITNVEVLSHTLEEGVVRFEFEVTNEEGLLVSGLE KVSAEVAELTDKGIARSRPDFEGTIAGGNANEETEGASLNMTENGRYEFLAPMPAVNAGTEGIIRLAVGGGENIAKSNYI VVDKTESLHTTSTATCHGCHVDYAASKLKHPSYTAINTDGETDLVAGCMVCHGNVVRDKGGYAKNTMQKIGHINHQKFEK DFEPANCYTCHAEPITKVNSMDTCTDCHDAAGVGTTSVAMTYSSFDETDDVRQFHKKVGERADIRAQHYTTTSAPYTNSS LEWDDHETTGGWCTDIALFNTDSGTDVQLNIAQLYAAGTLTYAGAYIHAYDNDSIVGRPSPRDSGGVTNSQYIENPDGSR AACYVRLDGIDAGFANAGFTASSRVTFKQQDDDGGYDGVSLTSYSDVVDRNEEKLQEYNRRHSVTLDSCTTCHNNETNYH KNGSYSDGGLDCVACHNNGQDRAGQRVVAMDAFETDSFRINAGYTIAVKNSDGEQTGWKANSAPGFGPLVHAQHWGLQSV IGSEISRDNEVALTNSAAKLNADNCVACHADGIDLNAVPNQYMLSRAFNGGNAGESGVASSPITANCFACHNNDQALNHM ISNGGELNLEVNKAGDWFTQGTSESCATCHAEGRSYGIEKYHVFDRKE >Mature_688_residues MRKFNKCSVALIVATAFGLAACSDGKDGSDDEDGISPLPPVVDATEITNVEVLSHTLEEGVVRFEFEVTNEEGLLVSGLE KVSAEVAELTDKGIARSRPDFEGTIAGGNANEETEGASLNMTENGRYEFLAPMPAVNAGTEGIIRLAVGGGENIAKSNYI VVDKTESLHTTSTATCHGCHVDYAASKLKHPSYTAINTDGETDLVAGCMVCHGNVVRDKGGYAKNTMQKIGHINHQKFEK DFEPANCYTCHAEPITKVNSMDTCTDCHDAAGVGTTSVAMTYSSFDETDDVRQFHKKVGERADIRAQHYTTTSAPYTNSS LEWDDHETTGGWCTDIALFNTDSGTDVQLNIAQLYAAGTLTYAGAYIHAYDNDSIVGRPSPRDSGGVTNSQYIENPDGSR AACYVRLDGIDAGFANAGFTASSRVTFKQQDDDGGYDGVSLTSYSDVVDRNEEKLQEYNRRHSVTLDSCTTCHNNETNYH KNGSYSDGGLDCVACHNNGQDRAGQRVVAMDAFETDSFRINAGYTIAVKNSDGEQTGWKANSAPGFGPLVHAQHWGLQSV IGSEISRDNEVALTNSAAKLNADNCVACHADGIDLNAVPNQYMLSRAFNGGNAGESGVASSPITANCFACHNNDQALNHM ISNGGELNLEVNKAGDWFTQGTSESCATCHAEGRSYGIEKYHVFDRKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73792; Mature: 73792
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKFNKCSVALIVATAFGLAACSDGKDGSDDEDGISPLPPVVDATEITNVEVLSHTLEEG CCCCCCCCEEEEEEHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHCC VVRFEFEVTNEEGLLVSGLEKVSAEVAELTDKGIARSRPDFEGTIAGGNANEETEGASLN EEEEEEEEECCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEE MTENGRYEFLAPMPAVNAGTEGIIRLAVGGGENIAKSNYIVVDKTESLHTTSTATCHGCH ECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCC VDYAASKLKHPSYTAINTDGETDLVAGCMVCHGNVVRDKGGYAKNTMQKIGHINHQKFEK CHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCHHHHHC DFEPANCYTCHAEPITKVNSMDTCTDCHDAAGVGTTSVAMTYSSFDETDDVRQFHKKVGE CCCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCC RADIRAQHYTTTSAPYTNSSLEWDDHETTGGWCTDIALFNTDSGTDVQLNIAQLYAAGTL CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEHHHEEECCCE TYAGAYIHAYDNDSIVGRPSPRDSGGVTNSQYIENPDGSRAACYVRLDGIDAGFANAGFT EEEEEEEEEECCCCEECCCCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCCCC ASSRVTFKQQDDDGGYDGVSLTSYSDVVDRNEEKLQEYNRRHSVTLDSCTTCHNNETNYH CCCEEEEEECCCCCCCCCEEECCHHHHHCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCC KNGSYSDGGLDCVACHNNGQDRAGQRVVAMDAFETDSFRINAGYTIAVKNSDGEQTGWKA CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEEEECCCCCCCCCCC NSAPGFGPLVHAQHWGLQSVIGSEISRDNEVALTNSAAKLNADNCVACHADGIDLNAVPN CCCCCCCCCHHHHHCCHHHHHHHHHCCCCCEEEECCCEEECCCCEEEEECCCEECCCCCC QYMLSRAFNGGNAGESGVASSPITANCFACHNNDQALNHMISNGGELNLEVNKAGDWFTQ HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCEEC GTSESCATCHAEGRSYGIEKYHVFDRKE CCCCCHHEEECCCCCCCCEEEEECCCCC >Mature Secondary Structure MRKFNKCSVALIVATAFGLAACSDGKDGSDDEDGISPLPPVVDATEITNVEVLSHTLEEG CCCCCCCCEEEEEEHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHCC VVRFEFEVTNEEGLLVSGLEKVSAEVAELTDKGIARSRPDFEGTIAGGNANEETEGASLN EEEEEEEEECCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEE MTENGRYEFLAPMPAVNAGTEGIIRLAVGGGENIAKSNYIVVDKTESLHTTSTATCHGCH ECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCC VDYAASKLKHPSYTAINTDGETDLVAGCMVCHGNVVRDKGGYAKNTMQKIGHINHQKFEK CHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCHHHHHC DFEPANCYTCHAEPITKVNSMDTCTDCHDAAGVGTTSVAMTYSSFDETDDVRQFHKKVGE CCCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCC RADIRAQHYTTTSAPYTNSSLEWDDHETTGGWCTDIALFNTDSGTDVQLNIAQLYAAGTL CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEHHHEEECCCE TYAGAYIHAYDNDSIVGRPSPRDSGGVTNSQYIENPDGSRAACYVRLDGIDAGFANAGFT EEEEEEEEEECCCCEECCCCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCCCC ASSRVTFKQQDDDGGYDGVSLTSYSDVVDRNEEKLQEYNRRHSVTLDSCTTCHNNETNYH CCCEEEEEECCCCCCCCCEEECCHHHHHCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCC KNGSYSDGGLDCVACHNNGQDRAGQRVVAMDAFETDSFRINAGYTIAVKNSDGEQTGWKA CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEEEECCCCCCCCCCC NSAPGFGPLVHAQHWGLQSVIGSEISRDNEVALTNSAAKLNADNCVACHADGIDLNAVPN CCCCCCCCCHHHHHCCHHHHHHHHHCCCCCEEEECCCEEECCCCEEEEECCCEECCCCCC QYMLSRAFNGGNAGESGVASSPITANCFACHNNDQALNHMISNGGELNLEVNKAGDWFTQ HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCEEC GTSESCATCHAEGRSYGIEKYHVFDRKE CCCCCHHEEECCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA