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The map label for this gene is fdhD [H]

Identifier: 167622439

GI number: 167622439

Start: 602282

End: 603145

Strand: Direct

Name: fdhD [H]

Synonym: Shal_0499

Alternate gene names: 167622439

Gene position: 602282-603145 (Clockwise)

Preceding gene: 167622438

Following gene: 167622440

Centisome position: 11.52

GC content: 40.86

Gene sequence:

>864_bases
ATGACGGAACTTGTGTGTGGCTTAAATAATATTACCGAGCAGACTGCAGTCACTTGTTTTCGCAATGATAGAGAGCAAGC
ATTAATTGAAACGGTGGCGAAAGAGGTCAGGGTTGCGCTGATTTATAATGGCATCTCCCACGTGGTAATGATGGCCTGCC
CAACGGCATTAAAAGAGTTTGCCATCGGTTTTAGTTTATCTGAATCGATTATCGAAGATGTGAAAGAGATCCGCTCCATC
GAAATAGAAACGATAGCTACCGGAGTATTGGTGCACATTGAGATAAGCCAACGCAGCTTTATGCAGTTAAAAGAGCATCG
TCGTAGCCTTGCTGGGCGCACAGGCTGTGGACTTTGTGGTATCGAGCAGATAGAGCAAACGGTTAAACCGATTGTAAAAG
TCACAGGGGCTGAAAAGTTTAATCTAAACAGCTTAAAAATAGCCTTAAGTAATCTTTATAAGCATCAAAATGCATTTAAT
TTGACTGGAGCGACACATGCTGCTGCCATGTTGTCGACAGAAGGTGATATTATGTGCTGCTTCGAAGATGTTGGCCGCCA
TGTGGCCCTCGATAAATTAATTGGTCATATCAGCTGCGATAATCAGGCTCGTCATTCGGCGTTGCTATTAACCAGTCGAG
CCAGTTTTGAAATGGTGCAAAAAGCCGCTATTGCAAATATTAGTATTATATTTGCAATTTCTTCTGCAACTTCGTTAGCG
ATTGATATCGCAAACCGATCGAATATTACTTTGGTTGGGTTTTGTCGTGAAAATAGAGTGACAATATATACCCATCCCGA
AAGGTTGTATTTATGTAATGAAACACTAAGTAATATTGATAACAATAACTTAGCTGTTATGTAA

Upstream 100 bases:

>100_bases
TATATGTTTACGAAGTGTGAGTCCTATTTACATCTATCCATTTATCGATACTCAAATCGTTAGGTGGAACATTACTTAGC
AGAAGAAATGGAACAACGCT

Downstream 100 bases:

>100_bases
TTAGGCTTGTAATTCAATCTTTTAATTTAGGTTGTAATTTAAGCACTTAATGTTAGTTGGTAATTTTAACTATGTGGTTA
ACGTTTAAAAATCAGTTTTT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTELVCGLNNITEQTAVTCFRNDREQALIETVAKEVRVALIYNGISHVVMMACPTALKEFAIGFSLSESIIEDVKEIRSI
EIETIATGVLVHIEISQRSFMQLKEHRRSLAGRTGCGLCGIEQIEQTVKPIVKVTGAEKFNLNSLKIALSNLYKHQNAFN
LTGATHAAAMLSTEGDIMCCFEDVGRHVALDKLIGHISCDNQARHSALLLTSRASFEMVQKAAIANISIIFAISSATSLA
IDIANRSNITLVGFCRENRVTIYTHPERLYLCNETLSNIDNNNLAVM

Sequences:

>Translated_287_residues
MTELVCGLNNITEQTAVTCFRNDREQALIETVAKEVRVALIYNGISHVVMMACPTALKEFAIGFSLSESIIEDVKEIRSI
EIETIATGVLVHIEISQRSFMQLKEHRRSLAGRTGCGLCGIEQIEQTVKPIVKVTGAEKFNLNSLKIALSNLYKHQNAFN
LTGATHAAAMLSTEGDIMCCFEDVGRHVALDKLIGHISCDNQARHSALLLTSRASFEMVQKAAIANISIIFAISSATSLA
IDIANRSNITLVGFCRENRVTIYTHPERLYLCNETLSNIDNNNLAVM
>Mature_286_residues
TELVCGLNNITEQTAVTCFRNDREQALIETVAKEVRVALIYNGISHVVMMACPTALKEFAIGFSLSESIIEDVKEIRSIE
IETIATGVLVHIEISQRSFMQLKEHRRSLAGRTGCGLCGIEQIEQTVKPIVKVTGAEKFNLNSLKIALSNLYKHQNAFNL
TGATHAAAMLSTEGDIMCCFEDVGRHVALDKLIGHISCDNQARHSALLLTSRASFEMVQKAAIANISIIFAISSATSLAI
DIANRSNITLVGFCRENRVTIYTHPERLYLCNETLSNIDNNNLAVM

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=267, Percent_Identity=49.812734082397, Blast_Score=271, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 31558; Mature: 31427

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELVCGLNNITEQTAVTCFRNDREQALIETVAKEVRVALIYNGISHVVMMACPTALKEF
CCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIGFSLSESIIEDVKEIRSIEIETIATGVLVHIEISQRSFMQLKEHRRSLAGRTGCGLCG
HHCCCHHHHHHHHHHHHHCEEHEEEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
IEQIEQTVKPIVKVTGAEKFNLNSLKIALSNLYKHQNAFNLTGATHAAAMLSTEGDIMCC
HHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEE
FEDVGRHVALDKLIGHISCDNQARHSALLLTSRASFEMVQKAAIANISIIFAISSATSLA
HHHCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHCCEEEEEEEECCCEEE
IDIANRSNITLVGFCRENRVTIYTHPERLYLCNETLSNIDNNNLAVM
EEECCCCCEEEEEEECCCCEEEEECCCEEEEECHHHHCCCCCCEEEC
>Mature Secondary Structure 
TELVCGLNNITEQTAVTCFRNDREQALIETVAKEVRVALIYNGISHVVMMACPTALKEF
CCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIGFSLSESIIEDVKEIRSIEIETIATGVLVHIEISQRSFMQLKEHRRSLAGRTGCGLCG
HHCCCHHHHHHHHHHHHHCEEHEEEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
IEQIEQTVKPIVKVTGAEKFNLNSLKIALSNLYKHQNAFNLTGATHAAAMLSTEGDIMCC
HHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEE
FEDVGRHVALDKLIGHISCDNQARHSALLLTSRASFEMVQKAAIANISIIFAISSATSLA
HHHCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHCCEEEEEEEECCCEEE
IDIANRSNITLVGFCRENRVTIYTHPERLYLCNETLSNIDNNNLAVM
EEECCCCCEEEEEEECCCCEEEEECCCEEEEECHHHHCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]