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The map label for this gene is rph [H]

Identifier: 167622362

GI number: 167622362

Start: 497250

End: 497963

Strand: Direct

Name: rph [H]

Synonym: Shal_0422

Alternate gene names: 167622362

Gene position: 497250-497963 (Clockwise)

Preceding gene: 167622354

Following gene: 167622363

Centisome position: 9.51

GC content: 48.6

Gene sequence:

>714_bases
ATGCGCCCAAGCAACAGAACTCCAGCACAGTCTCGCCCTGTGACTATTACTCGCCAGTTTACTGCTCATGCCGAAGGTTC
GGTTTTAGTAGAATTTGGTGACACCAAAGTACTGTGTACAGCTAGTTTTGAAGAAGGCGTACCGCGTTTCCTTAAAGGCC
AAGGCCAAGGTTGGGTAACTGCTGAATATGGTATGTTGCCACGTTCAACGCATAGCCGTATGCAGCGTGAAGCTGCTCGC
GGTAAGCAGTCTGGTCGTACTCAAGAAATTCAACGTCTAATTGGCCGCTCACTACGTGCTGCGGTAGACATGAAGCTTCT
AGGCGAAAACACCATTGTTATCGACTGTGATGTGATTCAGGCTGACGGTGGTACACGTACCGCTGCTATCACTGGTGCAT
GTGTTGCGCTCGTTGACGCGCTTAACTGGGCTCGTGGTAAAGGCATCTTGAAGACTAACCCACTTAAGTTCCTTATTGCT
GCGGTAAGTGTTGGTATCTATAAGGGCGAGCCAATCTGCGATTTAGAATATATCGAAGACAGCGCTGCTGAAACTGACAT
GAACGTGGTAATGACTGAGACCGGTAAGATTATCGAGATCCAGGGTACTGCAGAAGGTGAGCCGTTCAGCCACGAAGAGC
TATTGAGCCTTCTAGAATTGGCTAAGCACGGTATTCGCGAGATCGTTGATATCCAGAAAGCTTCGTTAAGCTAA

Upstream 100 bases:

>100_bases
TTTTGAGGCGCTGTTTTATGATTCAGATAGCATAGTGGCTAACATGTCCCTATAATATGCAGCCAAATTACCCCAATGCC
CTTAAATACAGGAATTCATC

Downstream 100 bases:

>100_bases
TCATCGTTTTTGTTATTAGGGCCCTACGGGGTCCTTTTTGTAAGTAAAAAAAATCAACTAATACTAAATGCTACTAAATA
ATACATAGCGTATTACCCCT

Product: ribonuclease PH

Products: NA

Alternate protein names: RNase PH; tRNA nucleotidyltransferase [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMQREAAR
GKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIA
AVSVGIYKGEPICDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS

Sequences:

>Translated_237_residues
MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMQREAAR
GKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIA
AVSVGIYKGEPICDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS
>Mature_237_residues
MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMQREAAR
GKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIA
AVSVGIYKGEPICDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS

Specific function: Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [H]

COG id: COG0689

COG function: function code J; RNase PH

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase PH family [H]

Homologues:

Organism=Escherichia coli, GI157672248, Length=211, Percent_Identity=77.7251184834123, Blast_Score=347, Evalue=6e-97,
Organism=Caenorhabditis elegans, GI71981632, Length=187, Percent_Identity=28.8770053475936, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001247
- InterPro:   IPR015847
- InterPro:   IPR020568
- InterPro:   IPR002381
- InterPro:   IPR018336 [H]

Pfam domain/function: PF01138 RNase_PH; PF03725 RNase_PH_C [H]

EC number: =2.7.7.56 [H]

Molecular weight: Translated: 25726; Mature: 25726

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS01277 RIBONUCLEASE_PH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT
CCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEECHHHCCHHHHCCCCCCEEE
AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ
EECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEEE
ADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIED
CCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHEECCCCCEEHHHHCC
SAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS
CCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT
CCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEECHHHCCHHHHCCCCCCEEE
AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ
EECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEEE
ADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIED
CCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHEECCCCCEEHHHHCC
SAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS
CCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA