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The map label for this gene is ygaE [C]

Identifier: 167622354

GI number: 167622354

Start: 485367

End: 486035

Strand: Direct

Name: ygaE [C]

Synonym: Shal_0414

Alternate gene names: 167622354

Gene position: 485367-486035 (Clockwise)

Preceding gene: 167622353

Following gene: 167622362

Centisome position: 9.29

GC content: 47.83

Gene sequence:

>669_bases
ATGCATCAACTATTTGAGCCATCAGTAAACGATATGAAAATCACTAAAGAAAGTTTGGAGTCTCAAGCCGTCCGTTATCT
GCGAACCCATATTTTGGAAGGTCACATCAAGTTAGGCGAAAAGCTGGTGGAAAGTGCGTTAGCCAAGCAGCTAGAGCTAT
CGCGCAGCACAGTGCGTATGGCCCTGAACTCGTTAGTGAACGAAGGCTTAGTGATCCAAAAGCCTTATTCAGGCTGGCAA
GTGGTTGAGATTAATCAGCAGGATCTGTGGGAGCTATACCATTTGCGGGTAGCCCTAGAGAGCGAAGCGGCTGCAATGGC
CGCAAAGTGGGCAAGCTGTGATGATAAAGCGCTTTTAGCCGATTTTTTTCAAGAGTACCAATTGCTGTGTTTACAACACA
GTGGTGACACCCGCCGCATTAGCGAAATGGATTGGCAACTACACCAGATGATAATTGAAATGTGTGGCAGTGAGCGCATG
CAAAGCCAATATAAGCAGATTTTATATCCGTTGCAGGCCTACATTGCGCTTACCCATCAAGATTATGACCTGTCTGATAG
TGCTTCTAGCCATCAAGCATTGGTGCAAGCCATCTGTGCCGGCGACGCTGAAACTGCAGCCCAGCAAGCAAGGGCCAATA
TCACACCGATGACGCGTAGCGCTGATTAG

Upstream 100 bases:

>100_bases
TGCAATTTGTCAGAGAAGCCATGCTGACTTAGATGCTACGAGGCTAGTGTTATAGTCATTATGTAAGACGTTACCTTGCT
TGTTAATCTATTAACATCAT

Downstream 100 bases:

>100_bases
TTACAAGCAGATAGAGTAACCTTGTCTGCTTCAATTTAGCGCTATAGTCGTTTTTAGTCGCACCACGTTTAGCAACGTGG
TGCTATATGTAGGTATTTAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; GntR Family Regulatory Protein

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MHQLFEPSVNDMKITKESLESQAVRYLRTHILEGHIKLGEKLVESALAKQLELSRSTVRMALNSLVNEGLVIQKPYSGWQ
VVEINQQDLWELYHLRVALESEAAAMAAKWASCDDKALLADFFQEYQLLCLQHSGDTRRISEMDWQLHQMIIEMCGSERM
QSQYKQILYPLQAYIALTHQDYDLSDSASSHQALVQAICAGDAETAAQQARANITPMTRSAD

Sequences:

>Translated_222_residues
MHQLFEPSVNDMKITKESLESQAVRYLRTHILEGHIKLGEKLVESALAKQLELSRSTVRMALNSLVNEGLVIQKPYSGWQ
VVEINQQDLWELYHLRVALESEAAAMAAKWASCDDKALLADFFQEYQLLCLQHSGDTRRISEMDWQLHQMIIEMCGSERM
QSQYKQILYPLQAYIALTHQDYDLSDSASSHQALVQAICAGDAETAAQQARANITPMTRSAD
>Mature_222_residues
MHQLFEPSVNDMKITKESLESQAVRYLRTHILEGHIKLGEKLVESALAKQLELSRSTVRMALNSLVNEGLVIQKPYSGWQ
VVEINQQDLWELYHLRVALESEAAAMAAKWASCDDKALLADFFQEYQLLCLQHSGDTRRISEMDWQLHQMIIEMCGSERM
QSQYKQILYPLQAYIALTHQDYDLSDSASSHQALVQAICAGDAETAAQQARANITPMTRSAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25186; Mature: 25186

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQLFEPSVNDMKITKESLESQAVRYLRTHILEGHIKLGEKLVESALAKQLELSRSTVRM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALNSLVNEGLVIQKPYSGWQVVEINQQDLWELYHLRVALESEAAAMAAKWASCDDKALLA
HHHHHHHCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
DFFQEYQLLCLQHSGDTRRISEMDWQLHQMIIEMCGSERMQSQYKQILYPLQAYIALTHQ
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
DYDLSDSASSHQALVQAICAGDAETAAQQARANITPMTRSAD
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHQLFEPSVNDMKITKESLESQAVRYLRTHILEGHIKLGEKLVESALAKQLELSRSTVRM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALNSLVNEGLVIQKPYSGWQVVEINQQDLWELYHLRVALESEAAAMAAKWASCDDKALLA
HHHHHHHCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
DFFQEYQLLCLQHSGDTRRISEMDWQLHQMIIEMCGSERMQSQYKQILYPLQAYIALTHQ
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
DYDLSDSASSHQALVQAICAGDAETAAQQARANITPMTRSAD
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA