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The map label for this gene is rbn [C]

Identifier: 167622301

GI number: 167622301

Start: 426342

End: 427322

Strand: Direct

Name: rbn [C]

Synonym: Shal_0360

Alternate gene names: 167622301

Gene position: 426342-427322 (Clockwise)

Preceding gene: 167622297

Following gene: 167622302

Centisome position: 8.16

GC content: 48.52

Gene sequence:

>981_bases
GTGATAAATCAGGTTCGTTCTTTTTTACTGAGTATTTGGGCATTTTTCTTACATCTACTCAGTCGTTTTAAAGAGGACCA
AGTCAATATCAAGGCTGGACACTTAGCCTATGTCACCCTGTTATCACTGGTGCCGATAGTGGCGGTGATGTTTTCTATGT
TGTCGGCGTTCCCAGTTTTTTCAGGCATTCGGGAAAAGTTAGAAGCGTTCGTTTACAACAATTTTCTACCAGCCGCTGGT
GATACGGTGCAGATCTACATTAATGAGTTTGTCGCCAATGCCTCTAAGGGCACCAGCGTGGGTATCGCCGCCTTAGTGGT
GGTGGCATTGATGCTGATCTCGGCTATCGATAAGGCACTAAACAGTATCTGGCGCACTAAAGAGAAGCGTCAGGCGGCGG
TGTCGTTTTCCATGTACTGGATGGTGTTGACCTTAGGGCCCGTGCTGGTGGGGGCAAGTTTAGTTGCAACATCTTACATA
GTGTCGTTAAAGGTGTTCAATACTTCAGAGCTCTCAGGGGTGGTACCAATACTGATTGAGCGCCTGCCTATGCTGTTTTC
TGTCGCGGCCTTCCTACTCTTGTATATGGTTGTACCAATTAAGAAGGTGAAATTCTTACATGCATTACTAGGTGCACTGG
TCGCTGCCATGTTGTTTGAATTGGGCAAGAAGGGTTTCGCATACTACGTGACTCAGTTCCCGAGCTACGAGGCGATCTAC
GGCGCCCTAGCGACAATACCCATTTTATTTGTGTGGGTTTATGTGTCTTGGGTGATCGTGCTGGTGGGGGCGGAAATCAC
CGCCGGATTACCGGAGTACCTGCATGAGTGTCAGCTGATCCGGGAAAAAGTATTAGCCGAGGATGAGGCTGAAGAGTTGG
CGCAAGATTCAAAACAGGTTAGCCAAATCGAGCAAACGAGTGAACAAACGCGCGAGCCAGCTCCTGATAAGCAGGCCGAG
TCTGCCGATAGGGATAAGTAG

Upstream 100 bases:

>100_bases
AGCTTTATTGTACCAAGATAGTGATTCGCAGATCATTTATCGTCTAATAGATTAAGACCAACTTTAACAGAATCAAGAGT
AACAAGTGAAAAATAAGATT

Downstream 100 bases:

>100_bases
GGCGAGTGCCTATTGCGCAGCCCAAAGCCTTTCGTCGAGTCTGGCTGGATGTCGGCGATACGCATCAGCTGTATGTGGCG
CAGTATGGTAATCCCGATGG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVFSGIREKLEAFVYNNFLPAAG
DTVQIYINEFVANASKGTSVGIAALVVVALMLISAIDKALNSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLVATSYI
VSLKVFNTSELSGVVPILIERLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAYYVTQFPSYEAIY
GALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECQLIREKVLAEDEAEELAQDSKQVSQIEQTSEQTREPAPDKQAE
SADRDK

Sequences:

>Translated_326_residues
MINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVFSGIREKLEAFVYNNFLPAAG
DTVQIYINEFVANASKGTSVGIAALVVVALMLISAIDKALNSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLVATSYI
VSLKVFNTSELSGVVPILIERLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAYYVTQFPSYEAIY
GALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECQLIREKVLAEDEAEELAQDSKQVSQIEQTSEQTREPAPDKQAE
SADRDK
>Mature_326_residues
MINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVFSGIREKLEAFVYNNFLPAAG
DTVQIYINEFVANASKGTSVGIAALVVVALMLISAIDKALNSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLVATSYI
VSLKVFNTSELSGVVPILIERLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAYYVTQFPSYEAIY
GALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECQLIREKVLAEDEAEELAQDSKQVSQIEQTSEQTREPAPDKQAE
SADRDK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=271, Percent_Identity=52.3985239852399, Blast_Score=283, Evalue=9e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 36098; Mature: 36098

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVF
CHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGIREKLEAFVYNNFLPAAGDTVQIYINEFVANASKGTSVGIAALVVVALMLISAIDKAL
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLVATSYIVSLKVFNTSELSGVVPILIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHH
RLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAYYVTQFPSYEAIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHH
GALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECQLIREKVLAEDEAEELAQDSKQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SQIEQTSEQTREPAPDKQAESADRDK
HHHHHHHHHHCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVF
CHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGIREKLEAFVYNNFLPAAGDTVQIYINEFVANASKGTSVGIAALVVVALMLISAIDKAL
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLVATSYIVSLKVFNTSELSGVVPILIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHH
RLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAYYVTQFPSYEAIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHH
GALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECQLIREKVLAEDEAEELAQDSKQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SQIEQTSEQTREPAPDKQAESADRDK
HHHHHHHHHHCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA