| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is spy [C]
Identifier: 167622280
GI number: 167622280
Start: 403532
End: 404014
Strand: Direct
Name: spy [C]
Synonym: Shal_0339
Alternate gene names: 167622280
Gene position: 403532-404014 (Clockwise)
Preceding gene: 167622277
Following gene: 167622281
Centisome position: 7.72
GC content: 43.69
Gene sequence:
>483_bases ATGATGAAAAAGAATAATTTAAAAGCAGGTTTGCTTGCCATAGTGGCCAGCACAGTATTATTAACAGCGGGTGTTAGCGC CGCTAATGACTACCATGGTTCACGTGATGGTAAGCAAGGTCATCATCAGATGAAAGGTGGATGTGGCAGTCATCACGATC TGCGTAAGATGTTTCACGGTTTAGATCTAAGCGATGAGCAGAAGACTGAGATGAAAGCGCTATTTAGTGCTCATCGTGAC GAGATGAAACAAAACCGTCCGTCTAAAGAAGCGCGGGCTGCACAAAAACAGCAGATGTTAGGTTTTATTACGTCACCTAA CTTTAACGAAGCTGAAGTGAAACAGGCACTAGTGGCTAAGCAAGAAGCTCGTCAGCAAAAGGCTGTGGGTATTATTAAGC TACAAAACCAAGCGTATCAGTTGCTGACCCCTGAGCAGCAAGAGAAATTTAAGCAGCGCTTTGCTAAGCATCATAAAAGG TAA
Upstream 100 bases:
>100_bases GTGTTTTACGCTACCTAAACCCTAGCTTACGTTGAGTAGTCTAAACTGGTAAGCGTCAAATCAAGCTTAGCGGGGCTAAG TAAATTTAATAGAGGCTACC
Downstream 100 bases:
>100_bases TCAGCTTTCGCTTTGAAGGCTAATCGACCCAATAGCTTTTATCTATTGGGTCAATTGGTTTTAACTTGAAGGAAATCATC AGTTTTTCTCTCTCGTTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Spheroplast Protein Y; Periplasmic Protein
Number of amino acids: Translated: 160; Mature: 160
Protein sequence:
>160_residues MMKKNNLKAGLLAIVASTVLLTAGVSAANDYHGSRDGKQGHHQMKGGCGSHHDLRKMFHGLDLSDEQKTEMKALFSAHRD EMKQNRPSKEARAAQKQQMLGFITSPNFNEAEVKQALVAKQEARQQKAVGIIKLQNQAYQLLTPEQQEKFKQRFAKHHKR
Sequences:
>Translated_160_residues MMKKNNLKAGLLAIVASTVLLTAGVSAANDYHGSRDGKQGHHQMKGGCGSHHDLRKMFHGLDLSDEQKTEMKALFSAHRD EMKQNRPSKEARAAQKQQMLGFITSPNFNEAEVKQALVAKQEARQQKAVGIIKLQNQAYQLLTPEQQEKFKQRFAKHHKR >Mature_160_residues MMKKNNLKAGLLAIVASTVLLTAGVSAANDYHGSRDGKQGHHQMKGGCGSHHDLRKMFHGLDLSDEQKTEMKALFSAHRD EMKQNRPSKEARAAQKQQMLGFITSPNFNEAEVKQALVAKQEARQQKAVGIIKLQNQAYQLLTPEQQEKFKQRFAKHHKR
Specific function: Could Be Involved In Zinc Resistance Or Another Aspect Of Zinc Metabolism. [C]
COG id: COG3678
COG function: function code UNTP; P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788039, Length=116, Percent_Identity=34.4827586206897, Blast_Score=64, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18030; Mature: 18030
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKNNLKAGLLAIVASTVLLTAGVSAANDYHGSRDGKQGHHQMKGGCGSHHDLRKMFHG CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHC LDLSDEQKTEMKALFSAHRDEMKQNRPSKEARAAQKQQMLGFITSPNFNEAEVKQALVAK CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QEARQQKAVGIIKLQNQAYQLLTPEQQEKFKQRFAKHHKR HHHHHHHHHHHHEECCCHHHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MMKKNNLKAGLLAIVASTVLLTAGVSAANDYHGSRDGKQGHHQMKGGCGSHHDLRKMFHG CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHC LDLSDEQKTEMKALFSAHRDEMKQNRPSKEARAAQKQQMLGFITSPNFNEAEVKQALVAK CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QEARQQKAVGIIKLQNQAYQLLTPEQQEKFKQRFAKHHKR HHHHHHHHHHHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA