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The map label for this gene is nahR [H]

Identifier: 167622271

GI number: 167622271

Start: 393275

End: 394207

Strand: Reverse

Name: nahR [H]

Synonym: Shal_0330

Alternate gene names: 167622271

Gene position: 394207-393275 (Counterclockwise)

Preceding gene: 167622276

Following gene: 167622269

Centisome position: 7.54

GC content: 49.95

Gene sequence:

>933_bases
ATGGAATTAGAAGAGATCTACCGCCAAGATCTAAGCCTGTTGATCGCGCTACAGATCTTGGTCGAAGAGCGCAGCGTCAC
TCAAGCGGCTAAGCGTTTACACCTAAGCCAATCGGCCACCAGCCGTATTCTTGCACGCCTTAGGGAGATGCTCGATGATC
CGCTATTTTCTCGTGTTGGTCAGCAGCTAGTACCGACCTCGTTCGCACTTGAGTGCTACCAGCAGTTGCGCCAACCTACT
GGACAGTTGATTGAACTGTTAACCCCTAAAGCCTTTGTGCCCGAAGAGTGTCAGCAACAGTTTTCTATCGCCGTAACCGA
TTATGCTATGCAGGCGTTGGTGCCCTTCATTTTGCCTCATATTTACCAAAAGGCGCCGCAGATCAGATTAGAGATTGTGC
CAGTACAGCAGAAAGAGTTACAGGCGCAGCTCAGTGTAAAAGGTGCCGATATGGCCATCTGCCGCGCCATTGGTCAAACC
GGAAACCTGCAGCATAGCTTTCTGGGTAAAGTCGGTGTCAGTTGTTTACTGTCCCCTAACCACCCACTCGCGGATAGCGA
TATCAGCTTAGAGGATTACCTGCACTACCCTCATGCGACCATTGCGATTAGTGATGGGGTAAAGGCGCTGCTCGATGATG
CCATAAGCCAATATCCGCCGCGCACCGAGTTATTAAGAACGCCGCACTTAGATACTGCGCTGGCACTGCAATCGATAAAC
CCGCTGATTATTACCCTGCCAGAGGGCATGGCCGCCATTGCTGCCGAGCGTCATTGTCTTAGAGTCAAACCCCTGCCATT
TAAGCTGCAAAGCTTAGATTACAATCTATTTTGGCATTCACGCTGTGAGCAAGATAAGGCGCAAAAATGGTTACGAAATG
AGATTATAGAGGCCACTCAAAGCCTGCTAACACAGACACCACAAAACCTGTAA

Upstream 100 bases:

>100_bases
AATATTTTCGGCTTACAGACTTCTATGCCATCATTACGTCTGTAGGTTTTAATAACGATTTACACTGTCATCACCCTGAG
GTTGGCAAGCAAAGGACATT

Downstream 100 bases:

>100_bases
CGAATTAGGTTTCCCTGGGCGGACTTAATAAACAAGGTACTAGATCCTAGGACGCTGCGCTGCGAGGACGGACTGAATAA
ACAAGGTACTAGGCCCTAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MELEEIYRQDLSLLIALQILVEERSVTQAAKRLHLSQSATSRILARLREMLDDPLFSRVGQQLVPTSFALECYQQLRQPT
GQLIELLTPKAFVPEECQQQFSIAVTDYAMQALVPFILPHIYQKAPQIRLEIVPVQQKELQAQLSVKGADMAICRAIGQT
GNLQHSFLGKVGVSCLLSPNHPLADSDISLEDYLHYPHATIAISDGVKALLDDAISQYPPRTELLRTPHLDTALALQSIN
PLIITLPEGMAAIAAERHCLRVKPLPFKLQSLDYNLFWHSRCEQDKAQKWLRNEIIEATQSLLTQTPQNL

Sequences:

>Translated_310_residues
MELEEIYRQDLSLLIALQILVEERSVTQAAKRLHLSQSATSRILARLREMLDDPLFSRVGQQLVPTSFALECYQQLRQPT
GQLIELLTPKAFVPEECQQQFSIAVTDYAMQALVPFILPHIYQKAPQIRLEIVPVQQKELQAQLSVKGADMAICRAIGQT
GNLQHSFLGKVGVSCLLSPNHPLADSDISLEDYLHYPHATIAISDGVKALLDDAISQYPPRTELLRTPHLDTALALQSIN
PLIITLPEGMAAIAAERHCLRVKPLPFKLQSLDYNLFWHSRCEQDKAQKWLRNEIIEATQSLLTQTPQNL
>Mature_310_residues
MELEEIYRQDLSLLIALQILVEERSVTQAAKRLHLSQSATSRILARLREMLDDPLFSRVGQQLVPTSFALECYQQLRQPT
GQLIELLTPKAFVPEECQQQFSIAVTDYAMQALVPFILPHIYQKAPQIRLEIVPVQQKELQAQLSVKGADMAICRAIGQT
GNLQHSFLGKVGVSCLLSPNHPLADSDISLEDYLHYPHATIAISDGVKALLDDAISQYPPRTELLRTPHLDTALALQSIN
PLIITLPEGMAAIAAERHCLRVKPLPFKLQSLDYNLFWHSRCEQDKAQKWLRNEIIEATQSLLTQTPQNL

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=288, Percent_Identity=25.3472222222222, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790147, Length=310, Percent_Identity=26.4516129032258, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789204, Length=227, Percent_Identity=24.6696035242291, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081766, Length=273, Percent_Identity=27.1062271062271, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34898; Mature: 34898

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEEIYRQDLSLLIALQILVEERSVTQAAKRLHLSQSATSRILARLREMLDDPLFSRVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
QQLVPTSFALECYQQLRQPTGQLIELLTPKAFVPEECQQQFSIAVTDYAMQALVPFILPH
HHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IYQKAPQIRLEIVPVQQKELQAQLSVKGADMAICRAIGQTGNLQHSFLGKVGVSCLLSPN
HHHCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHEEECCC
HPLADSDISLEDYLHYPHATIAISDGVKALLDDAISQYPPRTELLRTPHLDTALALQSIN
CCCCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCC
PLIITLPEGMAAIAAERHCLRVKPLPFKLQSLDYNLFWHSRCEQDKAQKWLRNEIIEATQ
CEEEECCCCHHHHHHHHHHEECCCCCEEHHHCCEEEHHHHHCCHHHHHHHHHHHHHHHHH
SLLTQTPQNL
HHHHCCCCCC
>Mature Secondary Structure
MELEEIYRQDLSLLIALQILVEERSVTQAAKRLHLSQSATSRILARLREMLDDPLFSRVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
QQLVPTSFALECYQQLRQPTGQLIELLTPKAFVPEECQQQFSIAVTDYAMQALVPFILPH
HHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IYQKAPQIRLEIVPVQQKELQAQLSVKGADMAICRAIGQTGNLQHSFLGKVGVSCLLSPN
HHHCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHEEECCC
HPLADSDISLEDYLHYPHATIAISDGVKALLDDAISQYPPRTELLRTPHLDTALALQSIN
CCCCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCC
PLIITLPEGMAAIAAERHCLRVKPLPFKLQSLDYNLFWHSRCEQDKAQKWLRNEIIEATQ
CEEEECCCCHHHHHHHHHHEECCCCCEEHHHCCEEEHHHHHCCHHHHHHHHHHHHHHHHH
SLLTQTPQNL
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]