Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622250
Identifier: 167622250
GI number: 167622250
Start: 367748
End: 369025
Strand: Direct
Name: 167622250
Synonym: Shal_0309
Alternate gene names: NA
Gene position: 367748-369025 (Clockwise)
Preceding gene: 167622249
Following gene: 167622253
Centisome position: 7.04
GC content: 44.68
Gene sequence:
>1278_bases TTGCCACACTTTGATACTGAACAAGTCGAGCAAGGCTGTGCTAAATTTTTACCGTTTGAAGCACAACAGCAAGCCCTTAA TCAGTTTGCAGAGCGCTACATTAAGCTCGTTTTAGCCGTTGGACAGCACGATTGCTACTATGTCGATGCTTACTATGGGC CTGAAGAGTGGCAAAAAGAGACCTATTGGCAACCGCTCGCCGATCTTCAGAGTCAATATCTACAGGGGAGTGAGCTAATA GAGGCTATGGCGGTACGGCTCAGCGAACCCGAGTTAGTCGAGCGTCATCAATTTCTTCAAACACAGTGGCTGTCGATTGG TGCATATTTAGCTCTCCTGCAGGGTAAAGAGTACAGTTTCAATGAAGAGGCGGTGGCTTTATACGACTGCCATTTAACTC CCTACTCATTACTAGAGCATCAACAAGTACTGGCTGATATCGAAGCGTTATTACCGGGAGAGGGCTCACTTACCAATCGT TATAACCAATTTAAGTCTCAATTTATTGTCCCAAAAGACAAGGCGGCAGAGGTGTTTACTGCATCGGTTGATATCGCCAG AAAACTCACCAGTATGCATATGCACTTGCCTGAAAACGAAAGTTTTGAAATTGAATATGTGAACGACAAAGTGTGGACGG CATATAACTGGTATAAGGGTGACTCCCACAGCTTAATTCAGTTAAATCAAGACCAACCCTTAGGTATCGAGCGCTACTTA GAGCTGGCGTCCCATGAAGGGTATCCGGGGCACCATGTATTTAATGTCTTACAAGAGCAGAAGTTGGTGAAGGCTAAGCA ATGGCTAGAATATGCCATCTATCCGCTATATAGCCCGATCTCTTACCTTTCAGAGGGTAGCGCAAACTATGCCTTGAGTT TGATTATGTCTGATGACGAGGTGGTGGATTTTGAGCGTGACGTATTAATGCCTCTTGCTGGACTGGAGGGTGATTTGGCT TTGTTCCATCAGATATTAAAGCTGGTAAAGAAACTTGGCTACTATGAAAATTATGTTAGCCAGTGTTTAACTGACAAGCT GGTTGATGCCGAAATGGCGCAAAAGATGTTAATTGATGGCGCTCTATATCCACAATCACGTGCTAAACAGCGAGTGCAGT TTTTTGAACGTAATCGCTCATATGTGATTAACTATAGCGTAGGCGAAGATGCCGTTGCTGCTTGGGTGGAGGCTAAGGCT GAGACGACAGTAGAGAAATGGACGCGTTTCGAGAGCATATTATCTAGGCCTCTAAACGCATCGGATATGCTTGTTTAA
Upstream 100 bases:
>100_bases TAAGTTTGACTCGCTAACCAACTTTTCTCACCTGCCACACATTGTATAATGTATGCAAATGATGTAAGTTTGACTCTCAT CTACCTGCTAGGAGTCTTTT
Downstream 100 bases:
>100_bases CGACTAGCTTATTGGTCAGCTTAGTTAAACGGGCTCATTTGGGTTGTGTTCAAAAGTGCGGCCTTGGCGTGGTGCTGAGG TCGGTACTTCTTTATAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MPHFDTEQVEQGCAKFLPFEAQQQALNQFAERYIKLVLAVGQHDCYYVDAYYGPEEWQKETYWQPLADLQSQYLQGSELI EAMAVRLSEPELVERHQFLQTQWLSIGAYLALLQGKEYSFNEEAVALYDCHLTPYSLLEHQQVLADIEALLPGEGSLTNR YNQFKSQFIVPKDKAAEVFTASVDIARKLTSMHMHLPENESFEIEYVNDKVWTAYNWYKGDSHSLIQLNQDQPLGIERYL ELASHEGYPGHHVFNVLQEQKLVKAKQWLEYAIYPLYSPISYLSEGSANYALSLIMSDDEVVDFERDVLMPLAGLEGDLA LFHQILKLVKKLGYYENYVSQCLTDKLVDAEMAQKMLIDGALYPQSRAKQRVQFFERNRSYVINYSVGEDAVAAWVEAKA ETTVEKWTRFESILSRPLNASDMLV
Sequences:
>Translated_425_residues MPHFDTEQVEQGCAKFLPFEAQQQALNQFAERYIKLVLAVGQHDCYYVDAYYGPEEWQKETYWQPLADLQSQYLQGSELI EAMAVRLSEPELVERHQFLQTQWLSIGAYLALLQGKEYSFNEEAVALYDCHLTPYSLLEHQQVLADIEALLPGEGSLTNR YNQFKSQFIVPKDKAAEVFTASVDIARKLTSMHMHLPENESFEIEYVNDKVWTAYNWYKGDSHSLIQLNQDQPLGIERYL ELASHEGYPGHHVFNVLQEQKLVKAKQWLEYAIYPLYSPISYLSEGSANYALSLIMSDDEVVDFERDVLMPLAGLEGDLA LFHQILKLVKKLGYYENYVSQCLTDKLVDAEMAQKMLIDGALYPQSRAKQRVQFFERNRSYVINYSVGEDAVAAWVEAKA ETTVEKWTRFESILSRPLNASDMLV >Mature_424_residues PHFDTEQVEQGCAKFLPFEAQQQALNQFAERYIKLVLAVGQHDCYYVDAYYGPEEWQKETYWQPLADLQSQYLQGSELIE AMAVRLSEPELVERHQFLQTQWLSIGAYLALLQGKEYSFNEEAVALYDCHLTPYSLLEHQQVLADIEALLPGEGSLTNRY NQFKSQFIVPKDKAAEVFTASVDIARKLTSMHMHLPENESFEIEYVNDKVWTAYNWYKGDSHSLIQLNQDQPLGIERYLE LASHEGYPGHHVFNVLQEQKLVKAKQWLEYAIYPLYSPISYLSEGSANYALSLIMSDDEVVDFERDVLMPLAGLEGDLAL FHQILKLVKKLGYYENYVSQCLTDKLVDAEMAQKMLIDGALYPQSRAKQRVQFFERNRSYVINYSVGEDAVAAWVEAKAE TTVEKWTRFESILSRPLNASDMLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49017; Mature: 48886
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHFDTEQVEQGCAKFLPFEAQQQALNQFAERYIKLVLAVGQHDCYYVDAYYGPEEWQKE CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH TYWQPLADLQSQYLQGSELIEAMAVRLSEPELVERHQFLQTQWLSIGAYLALLQGKEYSF HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NEEAVALYDCHLTPYSLLEHQQVLADIEALLPGEGSLTNRYNQFKSQFIVPKDKAAEVFT CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH ASVDIARKLTSMHMHLPENESFEIEYVNDKVWTAYNWYKGDSHSLIQLNQDQPLGIERYL HHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCHHHHH ELASHEGYPGHHVFNVLQEQKLVKAKQWLEYAIYPLYSPISYLSEGSANYALSLIMSDDE HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC VVDFERDVLMPLAGLEGDLALFHQILKLVKKLGYYENYVSQCLTDKLVDAEMAQKMLIDG CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC ALYPQSRAKQRVQFFERNRSYVINYSVGEDAVAAWVEAKAETTVEKWTRFESILSRPLNA CCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SDMLV CCCCC >Mature Secondary Structure PHFDTEQVEQGCAKFLPFEAQQQALNQFAERYIKLVLAVGQHDCYYVDAYYGPEEWQKE CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH TYWQPLADLQSQYLQGSELIEAMAVRLSEPELVERHQFLQTQWLSIGAYLALLQGKEYSF HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NEEAVALYDCHLTPYSLLEHQQVLADIEALLPGEGSLTNRYNQFKSQFIVPKDKAAEVFT CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH ASVDIARKLTSMHMHLPENESFEIEYVNDKVWTAYNWYKGDSHSLIQLNQDQPLGIERYL HHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCHHHHH ELASHEGYPGHHVFNVLQEQKLVKAKQWLEYAIYPLYSPISYLSEGSANYALSLIMSDDE HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC VVDFERDVLMPLAGLEGDLALFHQILKLVKKLGYYENYVSQCLTDKLVDAEMAQKMLIDG CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC ALYPQSRAKQRVQFFERNRSYVINYSVGEDAVAAWVEAKAETTVEKWTRFESILSRPLNA CCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SDMLV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA