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The map label for this gene is yibH [H]

Identifier: 167622216

GI number: 167622216

Start: 329820

End: 331043

Strand: Direct

Name: yibH [H]

Synonym: Shal_0275

Alternate gene names: 167622216

Gene position: 329820-331043 (Clockwise)

Preceding gene: 167622215

Following gene: 167622218

Centisome position: 6.31

GC content: 46.81

Gene sequence:

>1224_bases
ATGCTTGAGGGGTTAGCGGTATGGGCACTGTTTATTTATCTACTGCGCTTAGTCGGTATGCCATGGAACACCTACAGTAA
GGCTTTTGCTTACTTAGGTGGAACAGGTTGGTTAATGTTTGTCTGGGTGGGTTTACTCAACTATACCCCGATGGATCTCT
CTGGCGGCTCTTTGGTGCAATCACCGCACATTCAGTTGCGTCCTGCTAATAGTCAGATTCGAGGGGCTGTCGACAACATC
TACGTTCAGCCGAATCAGAAAGTAGAGGCGGGTCAGCTAGTTTATGACCTAGACGCTGAGCCTTATCAAATCGCTTTAAA
TAAAGCGTTAGTCGCAAAAGAAAGTGCCAATGTAGGGCTTTCTCTGGCGGCTGAAGATGTAAAGTTGGCATTAAAGCAAC
ACGAGGTGGCCATTGCCGATGTGAGTATTACCAAGAATCAGCTCAATGCAGCCACTAAAGATCTGGCGTGGAAACAAAAA
AACTTGGCGCGTTATATCGAGCAGAATCGTGTGGTACCAGATACGATAACGAAGAGTCAGCTCGATGAGCAACAAACAGC
GGTAGACCTTGCTATGGCGCAGGTACAGACCTACTCAACCCAAATTGAAAAAGCGCAGATGGCAGAGCATACCGCGCTGC
TTAATATTGAGAAATCACATCTTGCAGTGCAGAGCCGTCAGTCTGATCTGGATAGCGAGCATGAGAATGTGGCTCAGGCG
CAGTGGAACTTGGATAACACTAAGATCTATGCTCCTGCCGATGGTTATGTGACTAATTTTATTATGCGTGAGGGGCAGTA
TATAGGCGTCGCCCCACGTATGCAGATGTACACCAATGAAAAGTATGTGTTGATGCGGGTAAACCATCAGGCTATTCGTA
ATGTTAAAGTGGGTCAACTCGCTGAATTTGCCTCCGCGGTTTATCCTGGAAAGGTATTTAGCGCCGAAGTCGAAGGCATA
GTTGAAGCCACGGGAGAGGCGCAAGGGCGTTTGGTGGCTTTAGATGATAATGTTAGACAAACCACTGGGCAGAATATCAA
TAATAAGCACCATTTTGTCAGGCTAAAACTGACTGAAACGGGTGATTACGATATTCCTGTGGGCTCGGTTGGCCTTGCCT
GGATCTCCGGTACCAAACCGATTGAGTTCTTAGCATTCTTAGATGTGATCCGCGGTATCGTGATCAGAATGAAGTCGCAA
ATCTACTACTTCTACTCCATCTAA

Upstream 100 bases:

>100_bases
GTCGATGGTGAAAAGGCCCTGCGCCGAATTAGAGATGTGTGGCGCGAAAATGAACCCGCTACAGAGCAAACAGATGTAAC
AGTCAAAGAGGAGCAAACGA

Downstream 100 bases:

>100_bases
TCTAGTCTCACTAAGATAACCCCAAGCCTATAAAGCTTTGGGTTATCTTAATCTAATCTCTTATTCAGTTTGCTTGTTTT
TAGCTTAGGCAAAAACACAG

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLEGLAVWALFIYLLRLVGMPWNTYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQSPHIQLRPANSQIRGAVDNI
YVQPNQKVEAGQLVYDLDAEPYQIALNKALVAKESANVGLSLAAEDVKLALKQHEVAIADVSITKNQLNAATKDLAWKQK
NLARYIEQNRVVPDTITKSQLDEQQTAVDLAMAQVQTYSTQIEKAQMAEHTALLNIEKSHLAVQSRQSDLDSEHENVAQA
QWNLDNTKIYAPADGYVTNFIMREGQYIGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQLAEFASAVYPGKVFSAEVEGI
VEATGEAQGRLVALDDNVRQTTGQNINNKHHFVRLKLTETGDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQ
IYYFYSI

Sequences:

>Translated_407_residues
MLEGLAVWALFIYLLRLVGMPWNTYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQSPHIQLRPANSQIRGAVDNI
YVQPNQKVEAGQLVYDLDAEPYQIALNKALVAKESANVGLSLAAEDVKLALKQHEVAIADVSITKNQLNAATKDLAWKQK
NLARYIEQNRVVPDTITKSQLDEQQTAVDLAMAQVQTYSTQIEKAQMAEHTALLNIEKSHLAVQSRQSDLDSEHENVAQA
QWNLDNTKIYAPADGYVTNFIMREGQYIGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQLAEFASAVYPGKVFSAEVEGI
VEATGEAQGRLVALDDNVRQTTGQNINNKHHFVRLKLTETGDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQ
IYYFYSI
>Mature_407_residues
MLEGLAVWALFIYLLRLVGMPWNTYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQSPHIQLRPANSQIRGAVDNI
YVQPNQKVEAGQLVYDLDAEPYQIALNKALVAKESANVGLSLAAEDVKLALKQHEVAIADVSITKNQLNAATKDLAWKQK
NLARYIEQNRVVPDTITKSQLDEQQTAVDLAMAQVQTYSTQIEKAQMAEHTALLNIEKSHLAVQSRQSDLDSEHENVAQA
QWNLDNTKIYAPADGYVTNFIMREGQYIGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQLAEFASAVYPGKVFSAEVEGI
VEATGEAQGRLVALDDNVRQTTGQNINNKHHFVRLKLTETGDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQ
IYYFYSI

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=419, Percent_Identity=22.673031026253, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790012, Length=421, Percent_Identity=22.8028503562945, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 45399; Mature: 45399

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00599 AA_TRANSFER_CLASS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGLAVWALFIYLLRLVGMPWNTYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEE
SPHIQLRPANSQIRGAVDNIYVQPNQKVEAGQLVYDLDAEPYQIALNKALVAKESANVGL
CCCEEEECCCCHHCCCCCEEEECCCCCCCCCCEEEECCCCCEEEEEHHHHEEECCCCCCE
SLAAEDVKLALKQHEVAIADVSITKNQLNAATKDLAWKQKNLARYIEQNRVVPDTITKSQ
EEEHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LDEQQTAVDLAMAQVQTYSTQIEKAQMAEHTALLNIEKSHLAVQSRQSDLDSEHENVAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCHHHHHHHHH
QWNLDNTKIYAPADGYVTNFIMREGQYIGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQL
EECCCCCEEEECCCCHHHHHHHHCCCEEECCCCCCEECCCEEEEEEECHHHHHCCCHHHH
AEFASAVYPGKVFSAEVEGIVEATGEAQGRLVALDDNVRQTTGQNINNKHHFVRLKLTET
HHHHHHCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEEEEECC
GDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQIYYFYSI
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEECCEEEEEEC
>Mature Secondary Structure
MLEGLAVWALFIYLLRLVGMPWNTYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEE
SPHIQLRPANSQIRGAVDNIYVQPNQKVEAGQLVYDLDAEPYQIALNKALVAKESANVGL
CCCEEEECCCCHHCCCCCEEEECCCCCCCCCCEEEECCCCCEEEEEHHHHEEECCCCCCE
SLAAEDVKLALKQHEVAIADVSITKNQLNAATKDLAWKQKNLARYIEQNRVVPDTITKSQ
EEEHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LDEQQTAVDLAMAQVQTYSTQIEKAQMAEHTALLNIEKSHLAVQSRQSDLDSEHENVAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCHHHHHHHHH
QWNLDNTKIYAPADGYVTNFIMREGQYIGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQL
EECCCCCEEEECCCCHHHHHHHHCCCEEECCCCCCEECCCEEEEEEECHHHHHCCCHHHH
AEFASAVYPGKVFSAEVEGIVEATGEAQGRLVALDDNVRQTTGQNINNKHHFVRLKLTET
HHHHHHCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEEEEECC
GDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQIYYFYSI
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]