| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622215
Identifier: 167622215
GI number: 167622215
Start: 329480
End: 329827
Strand: Direct
Name: 167622215
Synonym: Shal_0274
Alternate gene names: NA
Gene position: 329480-329827 (Clockwise)
Preceding gene: 167622213
Following gene: 167622216
Centisome position: 6.3
GC content: 45.11
Gene sequence:
>348_bases ATGAGCTTGTTCAGCATGCCATTTGTTGATTCTGGAGTTGATACCGCGCTGCATAGTGTTGCTGCAGTGGTTATGGTGCT TACGGTTGCGGCTGCTGCATTTGGATTTTGGAAAATTCACGACATGCCAATTAATAAAGCACACAAGGAACAGCATCACC AAATAGGTTTGATTACTGCGCTGACTTGGATAGGTTTTATTTGGCACTGGGTATGGGTTATTGCGGTAATAGTTGCATTT GTCGATGGTGAAAAGGCCCTGCGCCGAATTAGAGATGTGTGGCGCGAAAATGAACCCGCTACAGAGCAAACAGATGTAAC AGTCAAAGAGGAGCAAACGAATGCTTGA
Upstream 100 bases:
>100_bases ATAAAGTATCGATAATTGATACATAAGTGTACTTCATCTTGTGGTGATGAAAATAAAAGGCAAACTGCGCAGCCAAAACA CTTTTTTGAGGTTTTTATCT
Downstream 100 bases:
>100_bases GGGGTTAGCGGTATGGGCACTGTTTATTTATCTACTGCGCTTAGTCGGTATGCCATGGAACACCTACAGTAAGGCTTTTG CTTACTTAGGTGGAACAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Permease Facilitator Superfamily
Number of amino acids: Translated: 115; Mature: 114
Protein sequence:
>115_residues MSLFSMPFVDSGVDTALHSVAAVVMVLTVAAAAFGFWKIHDMPINKAHKEQHHQIGLITALTWIGFIWHWVWVIAVIVAF VDGEKALRRIRDVWRENEPATEQTDVTVKEEQTNA
Sequences:
>Translated_115_residues MSLFSMPFVDSGVDTALHSVAAVVMVLTVAAAAFGFWKIHDMPINKAHKEQHHQIGLITALTWIGFIWHWVWVIAVIVAF VDGEKALRRIRDVWRENEPATEQTDVTVKEEQTNA >Mature_114_residues SLFSMPFVDSGVDTALHSVAAVVMVLTVAAAAFGFWKIHDMPINKAHKEQHHQIGLITALTWIGFIWHWVWVIAVIVAFV DGEKALRRIRDVWRENEPATEQTDVTVKEEQTNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12994; Mature: 12863
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFSMPFVDSGVDTALHSVAAVVMVLTVAAAAFGFWKIHDMPINKAHKEQHHQIGLITA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LTWIGFIWHWVWVIAVIVAFVDGEKALRRIRDVWRENEPATEQTDVTVKEEQTNA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCC >Mature Secondary Structure SLFSMPFVDSGVDTALHSVAAVVMVLTVAAAAFGFWKIHDMPINKAHKEQHHQIGLITA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LTWIGFIWHWVWVIAVIVAFVDGEKALRRIRDVWRENEPATEQTDVTVKEEQTNA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA