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The map label for this gene is lsrB [H]

Identifier: 167622206

GI number: 167622206

Start: 317216

End: 318190

Strand: Reverse

Name: lsrB [H]

Synonym: Shal_0265

Alternate gene names: 167622206

Gene position: 318190-317216 (Counterclockwise)

Preceding gene: 167622214

Following gene: 167622205

Centisome position: 6.09

GC content: 46.56

Gene sequence:

>975_bases
GTGAAAAAAGTCTTCTTCAAAGTTGCGGCTGTTTCTCTAGCTCTGTTATCTGCTAGTGTTTACGCTAAAGATTATGAAAT
CGTCAACGTGGTTAAAGTTTCTGGTATTCCTTGGTTCAACCAGATGGATAAAGGGGTCGAACAGGCCGCGGCCGATTTAG
GGGTCAATGCCCGTCAAGTAGGGCCTGCTACGCCAGATCCTGCTCAGCAGGTGAAGATGATTGAAGATCTTATCGCTAAG
GGCGTCGATGCCATCACCGTTGTGCCAAATGATGTGACCGTGCTTGAGCCAGTATTTAAGAAGGCGCGCGACAAGGGCAT
TATCGTACTGACCCATGAGTCACCTGAAAATCATAATGCCGACTGGAATATCGAGATGTTAGATAACCTTGCTTATGCCA
AAGCCACCATGGATGAGATGGCAAAACTTATGGATAGCAAGGGCGGTTATGTGGTTTTTGTGGGCTCGTTGACTGTGCCG
CTACATAATAACTGGGCCAATCTGGCCATCGATTATCAAAAGAATACTTATCCTGATATGTATGAAGTCACCAGCCGTAT
GCCTGTGGCTGAAAGTGTCGATGCCTCTTATGGCGCGACCAACGATCTGATGAAGGCTCATCCAGATATGAAAGGAATCA
TCTCTTACGGTTCATTAGGTTTGATTGGTGCTGGTGAAGCGATTAAGAAAAAACGCGCCAAAAATAAGATAGATACCGTT
GGTATCATCATGCCAAGTCAGGCAGCACAATACCTTATGCGCGGTGAGATTGATAAGGGCTTCTTATGGAACCCTGCCGA
TGCGGGTTATGCCATGGTTGCCGTCGCTAAGATGATGCTTGATGGCAAGTCGGTCGAAGCGGGTGTTGAGTTTGATAATC
TGGGTAAGGCCGAGATCAACACTCAGACACGAGTGATTAAGTTCAATAAGATCCTTGAAGTCGATAAGTCTAACGCCCGT
AGCCTAGGTTTCTAG

Upstream 100 bases:

>100_bases
TCTAACGGACTTATCCACCTCCTAACTTTATATTGTCGCCAAATTGCAGGGCAAGTCATTGCCTGCGCACCCTAGCTACA
TTTTCATAAGGTGAATCAAG

Downstream 100 bases:

>100_bases
GAGCTTAGGCTTCTAATTAGATTATCTACCTTAGATAACAGCTTATAGCGGGTTGCCAATACTTCATAGGCAACCCGCTT
CAATGTTTAAAGCCACGCTT

Product: putative periplasmic-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKKVFFKVAAVSLALLSASVYAKDYEIVNVVKVSGIPWFNQMDKGVEQAAADLGVNARQVGPATPDPAQQVKMIEDLIAK
GVDAITVVPNDVTVLEPVFKKARDKGIIVLTHESPENHNADWNIEMLDNLAYAKATMDEMAKLMDSKGGYVVFVGSLTVP
LHNNWANLAIDYQKNTYPDMYEVTSRMPVAESVDASYGATNDLMKAHPDMKGIISYGSLGLIGAGEAIKKKRAKNKIDTV
GIIMPSQAAQYLMRGEIDKGFLWNPADAGYAMVAVAKMMLDGKSVEAGVEFDNLGKAEINTQTRVIKFNKILEVDKSNAR
SLGF

Sequences:

>Translated_324_residues
MKKVFFKVAAVSLALLSASVYAKDYEIVNVVKVSGIPWFNQMDKGVEQAAADLGVNARQVGPATPDPAQQVKMIEDLIAK
GVDAITVVPNDVTVLEPVFKKARDKGIIVLTHESPENHNADWNIEMLDNLAYAKATMDEMAKLMDSKGGYVVFVGSLTVP
LHNNWANLAIDYQKNTYPDMYEVTSRMPVAESVDASYGATNDLMKAHPDMKGIISYGSLGLIGAGEAIKKKRAKNKIDTV
GIIMPSQAAQYLMRGEIDKGFLWNPADAGYAMVAVAKMMLDGKSVEAGVEFDNLGKAEINTQTRVIKFNKILEVDKSNAR
SLGF
>Mature_324_residues
MKKVFFKVAAVSLALLSASVYAKDYEIVNVVKVSGIPWFNQMDKGVEQAAADLGVNARQVGPATPDPAQQVKMIEDLIAK
GVDAITVVPNDVTVLEPVFKKARDKGIIVLTHESPENHNADWNIEMLDNLAYAKATMDEMAKLMDSKGGYVVFVGSLTVP
LHNNWANLAIDYQKNTYPDMYEVTSRMPVAESVDASYGATNDLMKAHPDMKGIISYGSLGLIGAGEAIKKKRAKNKIDTV
GIIMPSQAAQYLMRGEIDKGFLWNPADAGYAMVAVAKMMLDGKSVEAGVEFDNLGKAEINTQTRVIKFNKILEVDKSNAR
SLGF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=299, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35281; Mature: 35281

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVFFKVAAVSLALLSASVYAKDYEIVNVVKVSGIPWFNQMDKGVEQAAADLGVNARQV
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHC
GPATPDPAQQVKMIEDLIAKGVDAITVVPNDVTVLEPVFKKARDKGIIVLTHESPENHNA
CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
DWNIEMLDNLAYAKATMDEMAKLMDSKGGYVVFVGSLTVPLHNNWANLAIDYQKNTYPDM
CEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCCHH
YEVTSRMPVAESVDASYGATNDLMKAHPDMKGIISYGSLGLIGAGEAIKKKRAKNKIDTV
HHHHHCCCCHHHCCCCCCCCHHHHHHCCCHHHHHHCCCCCEEECCHHHHHHHHCCCCCEE
GIIMPSQAAQYLMRGEIDKGFLWNPADAGYAMVAVAKMMLDGKSVEAGVEFDNLGKAEIN
EEEECCHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEC
TQTRVIKFNKILEVDKSNARSLGF
CCEEEEEEHHHEECCCCCCCCCCC
>Mature Secondary Structure
MKKVFFKVAAVSLALLSASVYAKDYEIVNVVKVSGIPWFNQMDKGVEQAAADLGVNARQV
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHC
GPATPDPAQQVKMIEDLIAKGVDAITVVPNDVTVLEPVFKKARDKGIIVLTHESPENHNA
CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
DWNIEMLDNLAYAKATMDEMAKLMDSKGGYVVFVGSLTVPLHNNWANLAIDYQKNTYPDM
CEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCCHH
YEVTSRMPVAESVDASYGATNDLMKAHPDMKGIISYGSLGLIGAGEAIKKKRAKNKIDTV
HHHHHCCCCHHHCCCCCCCCHHHHHHCCCHHHHHHCCCCCEEECCHHHHHHHHCCCCCEE
GIIMPSQAAQYLMRGEIDKGFLWNPADAGYAMVAVAKMMLDGKSVEAGVEFDNLGKAEIN
EEEECCHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEC
TQTRVIKFNKILEVDKSNARSLGF
CCEEEEEEHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA